BLASTP 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. RID: 1112623446-19688-128693678921.BLASTQ2 Query= gi|12230915|sp|P75958|LOLE_ECOLI Lipoprotein releasing system transmembrane protein lolE (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 2,419,489 sequences; 819,463,594 total letters If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports
RID: 1112623446-19688-128693678921.BLASTQ2
Query= gi|12230915|sp|P75958|LOLE_ECOLI Lipoprotein releasing system transmembrane protein lolE (414 letters)
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples 2,419,489 sequences; 819,463,594 total letters
If you have any problems or questions with the results of this search please refer to the BLAST FAQs
Taxonomy reports
Score E Sequences producing significant alignments: (bits) Value gi|57242035|ref|ZP_00369975.1| conserved hypothetical integ... 234 3e-60 gi|57237769|ref|YP_179017.1| permease, putative [Campylobac... 223 8e-57 gi|34557623|ref|NP_907438.1| hypothetical protein WS1259 [W... 222 1e-56 gi|6968378|emb|CAB73198.1| putative integral membrane prote... 221 3e-56 gi|15611791|ref|NP_223442.1| hypothetical protein jhp0724 [... 221 5e-56 gi|32261866|gb|AAP76915.1| conserved hypothetical protein [... 216 2e-54 gi|57240551|ref|ZP_00368500.1| conserved hypothetical integ... 214 4e-54 gi|2313911|gb|AAD07831.1| conserved hypothetical integral m... 214 4e-54 gi|34557766|ref|NP_907581.1| PROBABLE TRANSMEMBRANE ATP-BIN... 205 2e-51 gi|57240328|ref|ZP_00368277.1| ABC transporter, ATP-binding... 187 7e-46 gi|6968074|emb|CAB75243.1| ABC-type transmembrane transport... 186 1e-45 gi|57238197|ref|YP_178722.1| macrolide-specific efflux prot... 185 2e-45 gi|57167894|ref|ZP_00367034.1| probable integral membrane p... 183 1e-44 gi|57242014|ref|ZP_00369954.1| ABC transporter, ATP-binding... 182 2e-44 gi|32263408|gb|AAP78453.1| ABC transporter [Helicobacter he... 179 2e-43 gi|57167636|ref|ZP_00366776.1| ABC transporter, ATP-binding... 174 5e-42 gi|57238673|ref|YP_179804.1| ABC transporter, permease prot... 132 3e-29 gi|6969078|emb|CAB73649.1| putative integral membrane prote... 129 1e-28 gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding... 126 1e-27 gi|57240580|ref|ZP_00368529.1| probable integral membrane p... 126 2e-27 gi|34557889|ref|NP_907704.1| ABC TRANSPORT PERMEASE PROTEIN... 124 6e-27 gi|6969077|emb|CAB73648.1| possible ABC transport system pe... 121 5e-26 gi|57238672|ref|YP_179803.1| ABC transporter, permease prot... 120 1e-25 gi|57168778|ref|ZP_00367909.1| permease protein, putative [... 116 1e-24 gi|34557888|ref|NP_907703.1| INTEGRAL MEMBRANE PROTEIN-Perm... 111 4e-23 gi|57240581|ref|ZP_00368530.1| probable ABC transport syste... 100 1e-19 gi|34557053|ref|NP_906868.1| hypothetical protein WS0637 [W... 77 8e-13 gi|34556820|ref|NP_906635.1| hypothetical protein WS0389 [W... 69 2e-10 Alignments >gi|57242035|ref|ZP_00369975.1| conserved hypothetical integral membrane protein [Campylobacter upsaliensis RM3195] gi|57017227|gb|EAL54008.1| conserved hypothetical integral membrane protein [Campylobacter upsaliensis RM3195] Length = 397 Score = 234 bits (597), Expect = 3e-60 Identities = 90/413 (21%), Positives = 187/413 (45%), Gaps = 17/413 (4%) Query: 3 MPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAV 62 M L+ + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R + Sbjct: 1 MSLTRYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFQKRFFVM 60 Query: 63 VPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQ 122 I E + +++ +PY++ + + V GVN ++ Sbjct: 61 NYPITILPKFY-APVDDEFVAELRREFSHLLFSPYLSTQVIAKGDNRFEGGVVFGVNFEE 119 Query: 123 EQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQP 182 E+++ + V DA ++ I+IG +A+ ++K+ D +S++ N NP + P Sbjct: 120 EKKI----NEVVKDALKDTNLSSYDILIGGALAEEFRLKKNDKLSLIFSNLNPSGFSLTP 175 Query: 183 KRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDA 241 R V D ++ + ++ L + G+ + + F + + Sbjct: 176 TTKRFDVKAKFNSGLIFYDKAYMYVKAETLRKVLGVKEGYDGVHIYSENAF---EDIAKL 232 Query: 242 GEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGD 301 W + +++ + +++ ++L+I VA NI+S+L+M V ++ + Sbjct: 233 RTYLGQDYAAIGWWEQNQNFFSALELEKRALFIVLMLIILVAGLNIISSLLMIVMNRRSE 292 Query: 302 IAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFL 361 IA+L LGA I+ F G+L G G +CGVI+ ++ W+ L Sbjct: 293 IALLLALGASKKEIKKSFFALGMLIGGSGMVCGVILAF--------VVLWLLGNFDLVSL 344 Query: 362 SSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 +D+Y LP +L LD L+ AL++ L+S+YPA++A+ ++ L + Sbjct: 345 PADVYGTSKLPLDLSVLDFVLTLMGALVIIALSSFYPAKKATEVNILDTLRNE 397 >gi|57237769|ref|YP_179017.1| permease, putative [Campylobacter jejuni RM1221] gi|57166573|gb|AAW35352.1| permease, putative [Campylobacter jejuni RM1221] Length = 401 Score = 223 bits (568), Expect = 8e-57 Identities = 91/417 (21%), Positives = 181/417 (43%), Gaps = 19/417 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R Sbjct: 1 MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFEKRFF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I E +D ++K +PYI+ +V+ + GVN Sbjct: 61 VMNYPITILPKFY-APVNDEFIDELRKTFPNLLFSPYISTQVVVKGDNRFEGGVLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 E+++ + V A ++ I++G + D + + D +S++ N NP + Sbjct: 120 NDEKKI----NEVVAKALKDENLSGFDILVGSALTDEFGLHKNDKLSLIFSNLNPSGFSL 175 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSS--VSGIALKMTDVFNANKL 237 P+ R V D ++ + ++ L M + GI + + F K Sbjct: 176 IPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPNYDGIHVYSDNAF---KD 232 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 V + W + +++ + +++ ++L+I VA NIVS+L+M V + Sbjct: 233 VEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIILVASLNIVSSLLMIVMN 292 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L LGA ++ F G+L G G + GV++ L Sbjct: 293 RRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAFFALWLLGN--------FD 344 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y LP +L +D +V AL++ L+S+YPA++A+ I+ L + Sbjct: 345 IVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQINILDTLRNE 401 >gi|34557623|ref|NP_907438.1| hypothetical protein WS1259 [Wolinella succinogenes DSM 1740] gi|34483340|emb|CAE10338.1| conserved hypothetical protein [Wolinella succinogenes] Length = 403 Score = 222 bits (567), Expect = 1e-56 Identities = 92/412 (22%), Positives = 182/412 (44%), Gaps = 17/412 (4%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNGF+++ ++ + Sbjct: 7 LIPYLTKRYLRFDKSQPFISIAAILAFAGVAIGVMVLIVAMAIMNGFDKDFERKLFTMNY 66 Query: 65 HGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQ 124 + +E L ++ +PY+ + +SG + V GV+ ++E+ Sbjct: 67 PLTLYP-KVSQGISEELLKELESSFPHLLFSPYLRTQAISKSGDAMEGAVVFGVDFEREK 125 Query: 125 RLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKR 184 +++ + + ++ +G I++G + + + + + ++ P + P Sbjct: 126 QINEVIAEALKESEI---SGRFDILVGSELRNEFFLARDSKLMLIFTQLEPTGLSLSPTM 182 Query: 185 VRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLVRDAG 242 R V G + D + L + GI + + K + Sbjct: 183 KRFDVKGFFRSGLTAYDKGYIFASLEAIRAIKKKEEGYYDGIHVFAKEPM---KEIDSIR 239 Query: 243 EVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDI 302 I W G + +Q+ + +++ ++L+I +A NI+S+L+M V ++ +I Sbjct: 240 AKLPLEAGIVGWWQQNGNFFAALQLEKRALFIVLMLIILIASLNIISSLLMTVMNRRREI 299 Query: 303 AVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLS 362 A+L TLGA I+ F G GL G GV++ I W+ L Sbjct: 300 ALLLTLGATQSEIKRTFFRLGNTIGLSGIALGVLLA--------GIALWVLSTFPIISLP 351 Query: 363 SDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 +D+Y LP EL W+D +L+ + L+ LL+S+YPA +A+ IDP VL + Sbjct: 352 ADVYGSSKLPLELSWIDFGMILLGSTLIVLLSSYYPAYQATKIDPLSVLRNE 403 >gi|6968378|emb|CAB73198.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11279732|pir||D81368 probable integral membrane protein Cj0941c [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792270|ref|NP_282093.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 401 Score = 221 bits (564), Expect = 3e-56 Identities = 89/417 (21%), Positives = 180/417 (43%), Gaps = 19/417 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R Sbjct: 1 MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFEKRFF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I E +D ++K +PY++ +V+ + GVN Sbjct: 61 VMNYPITILPKFY-APVNDEFIDELRKTFPNLLFSPYLSTQVVVKGDNRFEGGVLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 E+++ + V A ++ I++G + D + + D +S++ N NP + Sbjct: 120 NDEKKI----NEVVAKALKDENLSGFDILVGSALTDEFGLHKNDKLSLIFSNLNPSGFSL 175 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSS--VSGIALKMTDVFNANKL 237 P+ R V D ++ + ++ L + + GI + + F K Sbjct: 176 VPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPNYDGIHVYSDNAF---KD 232 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 V + W + +++ + +++ ++L+I VA NIVS+L+M V + Sbjct: 233 VEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIILVASLNIVSSLLMIVMN 292 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L LGA ++ F G+L G G + GV++ L Sbjct: 293 RRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAFFALWLLGN--------FD 344 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L D+Y LP +L +D +V AL++ L+S+YPA++A+ I+ L + Sbjct: 345 IVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQINILDTLRNE 401 >gi|15611791|ref|NP_223442.1| hypothetical protein jhp0724 [Helicobacter pylori J99] gi|4155280|gb|AAD06298.1| putative [Helicobacter pylori J99] gi|7464818|pir||D71897 hypothetical protein jhp0724 - Helicobacter pylori (strain J99) Length = 410 Score = 221 bits (562), Expect = 5e-56 Identities = 84/417 (20%), Positives = 187/417 (44%), Gaps = 13/417 (3%) Query: 2 AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILA 61 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNG +E ++ Sbjct: 3 NRSLIFFLIKRYLRFDKSQPFISITALLAFFGVAVGVMVLIVAMAIMNGMSKEFEKKLFV 62 Query: 62 VVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQ 121 + + P+ +E + ++K +PY+ ++S ++ V GV+ Sbjct: 63 MNYPLTLYTTS-PYGISEEVVQALEKKFPNLLFSPYLQTQSPIKSAHSMNGGVVFGVDFS 121 Query: 122 QEQRLSALPSF-VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 +E+ ++ + + ++ + +I+GK + +L + + P + Sbjct: 122 KERHINEVLNDALKNINENDLFKNPFNLIVGKSLRYSLNLDLNQKADLFFTELEPTGLTL 181 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDV-FNANKL 237 P R + G D S+ L + G+ + + KL Sbjct: 182 SPIMKRFTIKGDFDSGLKSYDMSYMYASLQAISAIRRLPLGLYDGVHVYSKTPMKDIEKL 241 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 + + + I+ W G + +++ + +++ ++L+I +A NI+S+L+M V + Sbjct: 242 RNALKTINHHGIGIEGWWQQNGNFFSAMELEKRALFIVLMLIILMASLNIISSLLMVVMN 301 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L ++G+ I+ F + G + GL G + GV++ + L+ + Sbjct: 302 RRKEIALLFSMGSSQKEIQKTFFYLGNIIGLGGVILGVVLAFISMYLLS--------VFP 353 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y I+ LP +L +D L+ ++++ L+S+YP+++AS ID VL + Sbjct: 354 IISLPADVYGINTLPLDLSLMDFTLTLIGSVIIVALSSYYPSKKASAIDALSVLRNE 410 >gi|32261866|gb|AAP76915.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] gi|32265817|ref|NP_859849.1| hypothetical protein HH0318 [Helicobacter hepaticus ATCC 51449] Length = 417 Score = 216 bits (549), Expect = 2e-54 Identities = 91/423 (21%), Positives = 185/423 (43%), Gaps = 22/423 (5%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L + R+ R + +S+ ++++ G+ +GV VL V ++ MNG +E ++ + Sbjct: 4 LIFYLLPRYLRFDKTQPFISITALLAFFGVGIGVMVLCVAMAIMNGMTKEFERKLSIMNY 63 Query: 65 HGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQ 124 I + + L ++ +PY+ + + + G + A V GV+ Q E Sbjct: 64 PLSIYSTTYEGVD-ANILQALKAHFPQFLFSPYLRYQAVGKIGNTMSAAMVFGVDMQAES 122 Query: 125 RLSAL----------PSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSN 174 +++A+ +F E I+IGK + + ++ GD + + Sbjct: 123 QINAVVKKAFKTSQNSDTEFKKNIESFMQKEFSILIGKSMEENFGLESGDKLDLFFTQLE 182 Query: 175 PEHKLMQPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSSV-SGIALKMTDV- 231 P P R +AG + D ++ L+ Q+ + + GI + + Sbjct: 183 PSGFSYTPINKRFSIAGFFESGLRAYDEAYVYTNLSALQKIRHLNEGIYDGIHIYTPNPM 242 Query: 232 FNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTL 291 + + + ++ W G + +++ + +++ ++L+I +A NI+S+L Sbjct: 243 QDIHSISDFLNTQFPYRAGVEGWWQQNGNFFSALELEKRALFIVLMLIIVMAALNIISSL 302 Query: 292 VMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEW 351 +M V ++ +IA+L +LGA I++IF W G GL G G+I+ + L Sbjct: 303 LMVVMNRRKEIALLLSLGASRQEIKSIFFWVGNTIGLSGIALGIILTGIAMYVLDT---- 358 Query: 352 IEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVL 411 L +D+Y LP +L +D ++ A+ + L+S+YPAR+AS +D +VL Sbjct: 359 ----FPIISLPADVYGSSKLPLDLSLIDFLLTIIGAIFIVCLSSYYPARKASLVDTLQVL 414 Query: 412 SGQ 414 + Sbjct: 415 RNE 417 >gi|57240551|ref|ZP_00368500.1| conserved hypothetical integral membrane protein [Campylobacter lari RM2100] gi|57018892|gb|EAL55665.1| conserved hypothetical integral membrane protein [Campylobacter lari RM2100] Length = 400 Score = 214 bits (545), Expect = 4e-54 Identities = 92/416 (22%), Positives = 183/416 (43%), Gaps = 18/416 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + + L +++ +G+++G+ VL+V ++ MNGF++E ++ Sbjct: 1 MQKSIPRYLLFKYLRFDKDQPFIMLSKILAFLGVSIGLCVLLVAMAIMNGFDKEFERKLF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I + + + K P + +PYI + + L + GVN Sbjct: 61 TMNYPITILPRFGASVDDKILQELRIKFPNLL-FSPYIATQVIARNDLKLEGGMLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 + E+++ + V A N K I++GKG+ D + + ++++ N N + Sbjct: 120 EDEKKI----NEVIAQALENKKLDNFDILVGKGLKDEFGLDYNEKITLIFSNLNASGLSL 175 Query: 181 QPKRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLV 238 P+ R V D ++ + + L S G+ + F + + Sbjct: 176 IPQVKRFDVKADFSSGLLAYDKAYMYTDVKALAKILSYPQGSYDGVHVYSNKPF---EDI 232 Query: 239 RDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDK 298 + + + W G + + + + +++ ++L+I VA NIVS+L+M V ++ Sbjct: 233 KQIEDFLGARYASIGWWEQNGNFFAALALEKRALFIVLMLIILVASLNIVSSLLMIVMNR 292 Query: 299 SGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGH 358 +IA+L +LGA I+ F G L G G + GVI+ I W+ Sbjct: 293 RSEIALLLSLGASKLEIKKTFFSLGFLIGGSGIIAGVILA--------AIALWVLGNFDI 344 Query: 359 QFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L SD+Y + LP EL +D L A+++ L+S+YPA++A+ +D L + Sbjct: 345 ISLPSDVYGMSKLPLELSLVDFCATLFGAIVIVGLSSYYPAKKATQVDILDTLRNE 400 >gi|2313911|gb|AAD07831.1| conserved hypothetical integral membrane protein [Helicobacter pylori 26695] gi|7463943|pir||C64618 conserved hypothetical integral membrane protein HP0787 - Helicobacter pylori (strain 26695) gi|15645406|ref|NP_207580.1| conserved hypothetical integral membrane protein [Helicobacter pylori 26695] Length = 410 Score = 214 bits (545), Expect = 4e-54 Identities = 85/417 (20%), Positives = 186/417 (44%), Gaps = 13/417 (3%) Query: 2 AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILA 61 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNG +E ++ Sbjct: 3 NRSLIFFLIKRYLRFDKSQPFISITALLAFFGVAVGVMVLIVAMAIMNGMSKEFEKKLFV 62 Query: 62 VVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQ 121 + + P+ +E + ++K +PY+ L++S ++ V GV+ Sbjct: 63 MNYPLTLYTTS-PYGISEEVVQALEKKFPNLLFSPYLQTQSLIKSAHSMNGGVVFGVDFS 121 Query: 122 QEQRLSALPSF-VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 +E+R++ + + ++ + +I+GK + +L + + P + Sbjct: 122 KEKRINEVLNDALKNINENDLFKNPFNLIVGKSLRYSLNLDLNQKADLFFTELEPTGLTL 181 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDV-FNANKL 237 P R + G D S+ L + G+ + + L Sbjct: 182 SPIMKRFTIKGDFDSGLKSYDMSYMYAGLQAISAIRRLPLGLYDGVHVYSKTPMKDIEIL 241 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 + + + I+ W G + +++ + +++ ++L+I +A NI+S+L+M V + Sbjct: 242 RNALKTINHHGIGIEGWWQQNGNFFSAMELEKRALFIVLMLIILMASLNIISSLLMVVMN 301 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L ++G+ I+ F + G + GL G GV++ + L+ + Sbjct: 302 RRKEIALLFSMGSSQKEIQKTFFYLGNIIGLGGVALGVVLAFLSMYLLS--------VFP 353 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y I+ LP L +D L+ ++++ L+S+YP+++AS ID VL + Sbjct: 354 IISLPADVYGINTLPLNLSLMDFTLTLIGSVIIVGLSSYYPSKKASTIDALSVLRNE 410 >gi|34557766|ref|NP_907581.1| PROBABLE TRANSMEMBRANE ATP-BINDING ABC TRANSPORTER PROTEIN [Wolinella succinogenes DSM 1740] gi|34483483|emb|CAE10481.1| PROBABLE TRANSMEMBRANE ATP-BINDING ABC TRANSPORTER PROTEIN [Wolinella succinogenes] Length = 643 Score = 205 bits (522), Expect = 2e-51 Identities = 67/429 (15%), Positives = 159/429 (37%), Gaps = 53/429 (12%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L L ++ + R M +V++ +GI +GVA +IV L+ +G + + RI A+ Sbjct: 249 LELFEAMKMAF--RSLKMNLFRTVLTLLGIVIGVASVIVMLAIGDGAKNAVLERISAMGT 306 Query: 65 HGEIEAVDQPW--------TNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVK 116 + + P T E ++ + ++ I AA P + G N ++ + Sbjct: 307 NILVIRPGMPNSRGFSNIATLIPEDMEAIMELDNIIAAMPENKKSVTTRYGNNDQSTSLN 366 Query: 117 GVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPE 176 + + + + K+ + +++GK V AL + Sbjct: 367 ATSSHFTKVRNWPLGKGVFFTEEDEKSYAKVVVLGKTVEKAL-----------FGEEDAL 415 Query: 177 HKLMQPKRVRLHVAGILQ-----LSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDV 231 + + + + G++ SG+ + ++P +L + I + + D+ Sbjct: 416 GRFILVDNIMFQIIGVMSNRGASASGEDEDDVILVPYTTGSLHLIGQKFLRNITVAVDDL 475 Query: 232 FNANKLVRDAGEVT------NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACF 285 + R+ + I++ + + + ++ + + V Sbjct: 476 SRMGETEREIHSLLLARHGGIEDFRIRNMASLIEDVTQTQNTLTILLGSIAAISLLVGGI 535 Query: 286 NIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQL 345 +++ ++++V +++ +I + GA+ I F+ ++ G L GV+IG+ VS + Sbjct: 536 GVMNIMLVSVTERTKEIGIRIATGARMRHILQQFLIEAVVVSALGGLIGVVIGLGVSALI 595 Query: 346 TPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNI 405 + P + + + A + LL + PAR+A+ + Sbjct: 596 EGL---------------------GTPVYYSLMPIVWAFGCAFVTGLLFGYLPARKAARL 634 Query: 406 DPARVLSGQ 414 DP L+ + Sbjct: 635 DPVVALASE 643 >gi|57240328|ref|ZP_00368277.1| ABC transporter, ATP-binding protein [Campylobacter lari RM2100] gi|57018669|gb|EAL55442.1| ABC transporter, ATP-binding protein [Campylobacter lari RM2100] Length = 643 Score = 187 bits (474), Expect = 7e-46 Identities = 56/411 (13%), Positives = 146/411 (35%), Gaps = 47/411 (11%) Query: 24 SLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTNWQE--- 80 L S+++ +GI +G+A ++ ++ G ++ + I ++ + + + + Sbjct: 260 KLRSLLTMLGIIIGIASVVCVVALGLGAQQNILASISSIGTNTIEVVSGRGLGDIRSGRT 319 Query: 81 -----ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQG 135 L + +P + A + G+V N ++ GV P + + + Sbjct: 320 RLNLSDLKTLSSLPYLEAVEADVGKIGVVTYKNNSLQARIYGVGPNHLRLRGFVMVDGRF 379 Query: 136 DAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQL 195 + K II + L + K + + L + G+L+ Sbjct: 380 INNEDIKDNTNICIIDENALRILFDNISAK--------DVLGKSVIFNKQPLTIVGVLKK 431 Query: 196 -----SGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVT--- 245 + D + P + + I K+ D N ++ Sbjct: 432 ERDNKGFRADENTIKIYTPYTTLMNKITGDKQIRAIVTKVKDEVNPTLAEEAMVKILEIK 491 Query: 246 --NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIA 303 + + + + + ++ V+ + V +++ ++++V +++ +I Sbjct: 492 RGKKDFFTINSDAIKNAIEENTATLTLLISSIAVVSLIVGGIGVMNIMLVSVSERTREIG 551 Query: 304 VLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSS 363 V +GA+ I F+ +L G++ GV++ ++ + + Sbjct: 552 VRMAIGARKEDILMQFLIEAVLICSLGAIFGVMLSFIIIEVFNSLNFGFTMI-------- 603 Query: 364 DIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L VF L++++L+ ++ ++PA+ A+N++P LS + Sbjct: 604 -----------LSLNSVFLGLLSSVLIGVVFGFFPAKNAANLNPISALSKE 643 >gi|6968074|emb|CAB75243.1| ABC-type transmembrane transport protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11278932|pir||F81408 ABC-type transmembrane transport protein Cj0607 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15791967|ref|NP_281790.1| ABC-type transmembrane transport protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 641 Score = 186 bits (472), Expect = 1e-45 Identities = 52/425 (12%), Positives = 148/425 (34%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 FKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLEYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + K ++ L + + N + Sbjct: 364 GVNNFAIEGLRIDAGRILNNDDVKNSTNVAVLDFNAKKNLFPDE--------KSENILGR 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ ++ + IP L ++ I +K+ D ++ Sbjct: 416 VVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQKDFFTFNSDTFKQAITANKRTTTILTACVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GVI+ + V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICTIGAILGVILSIFVIFAFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++ + ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSMFIGVVFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641 >gi|57238197|ref|YP_178722.1| macrolide-specific efflux protein macB [Campylobacter jejuni RM1221] gi|57167001|gb|AAW35780.1| macrolide-specific efflux protein macB [Campylobacter jejuni RM1221] Length = 641 Score = 185 bits (470), Expect = 2e-45 Identities = 52/425 (12%), Positives = 148/425 (34%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 FKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLEYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + K ++ L + + N + Sbjct: 364 GVNNFAIEGLRIDAGRILNNDDVKNSTNVAVLDFNAKKNLFPDE--------KSENILGR 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ ++ + IP L ++ I +K+ D ++ Sbjct: 416 VVLFNSQSFKIIGVLQKDTDKPIEDNVVRLYIPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQKDFFTFNSDTFKQAITANKRTTTILTACVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GVI+ + V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICTIGAILGVILSIFVIFAFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++ + ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSMFIGVVFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641 >gi|57167894|ref|ZP_00367034.1| probable integral membrane protein Cj0941c [Campylobacter coli RM2228] gi|57021016|gb|EAL57680.1| probable integral membrane protein Cj0941c [Campylobacter coli RM2228] Length = 354 Score = 183 bits (464), Expect = 1e-44 Identities = 81/370 (21%), Positives = 159/370 (42%), Gaps = 19/370 (5%) Query: 48 MNGFERELNNRILAVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESG 107 MNGF++E R + I + + + +++ +PYI+ + ++ Sbjct: 1 MNGFDKEFEKRFFVMNYPITIVPKFYSPMD-DDLVTELKREFPHLLFSPYISTQVVAKAD 59 Query: 108 ANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVS 167 + GVN E ++ + V A ++ I++G +AD L + + D +S Sbjct: 60 NRFEGGVLFGVNFNDEVKI----NEVVAKALKDENLSGFDILVGSVLADELNLHKNDKLS 115 Query: 168 IMIPNSNPEHKLMQPKRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMGSS--VSGI 224 ++ N +P + P+ R V D ++ + ++ L + + G+ Sbjct: 116 LIFSNLSPSGFSLVPQAKRFDVKARFTSGLIFYDKAYMYTDVNALRKVLGISNQQSYDGV 175 Query: 225 ALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVAC 284 + + F K V S + W + +++ + +++ ++L+I VA Sbjct: 176 HVYSENAF---KDVEKLKSYLKSDYAVVGWWEQNQNFFSALKLEKRALFIVLMLIILVAS 232 Query: 285 FNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQ 344 NIVS+L+M V ++ +IA+L LGA ++ F G+L G G + G+I+ V Sbjct: 233 LNIVSSLLMIVMNRRTEIALLLALGASKLEVKKSFFALGMLIGGGGMIIGIILAFFVLWL 292 Query: 345 LTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASN 404 L L +D+Y LP +L +D LV AL++ L+S+YPA++A+ Sbjct: 293 LGN--------FDIVTLPADVYGTSKLPLDLSVMDFSLTLVGALIIIALSSYYPAKKATQ 344 Query: 405 IDPARVLSGQ 414 I+ L + Sbjct: 345 INVLDTLRNE 354 >gi|57242014|ref|ZP_00369954.1| ABC transporter, ATP-binding protein [Campylobacter upsaliensis RM3195] gi|57017206|gb|EAL53987.1| ABC transporter, ATP-binding protein [Campylobacter upsaliensis RM3195] Length = 641 Score = 182 bits (462), Expect = 2e-44 Identities = 46/425 (10%), Positives = 138/425 (32%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S ++ +GI +G+A ++ ++ G + ++ ++ + Sbjct: 250 FKIAYSSIIAHK------LRSFLTMLGIIIGIASVVCVVALGLGSQVKVLQTTSSLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A +G++ + +GV Sbjct: 304 IEIRPGRGFGDLRSGKTRLNFSDLETLRSLEYLEAVEASERTSGVLTYTNKSLNARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + ++ ++ + + K Sbjct: 364 GVNSFNMDGLKLEVGRILDEKDLSVSANVAVLDFNAKKNIFPNV--------KSEELLGK 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + GILQ + + IP L + I +K+ D ++ Sbjct: 416 IVIFNSTPFKIIGILQKDTRRPISDNIVRLYIPYTTLMNKLTGDRKLREIIVKVKDNVSS 475 Query: 235 NKLVRDA-----GEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + + ++ + V +++ Sbjct: 476 SLAENAIIRVLELKREQRDFFTFNIDSFKEAITANKRTTTILTICVALIALVVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ + G+ GV + V Sbjct: 536 IMLVSVSERTREIGIRMAVGARREDILMQFLIEAVMICVIGAFMGVALSFGVIFVFNLFA 595 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 + V L++++L+ L+ ++PA+ A+N++P Sbjct: 596 SDFLMIF-------------------SGSAVLTGLLSSVLIGLIFGFFPAKNAANLNPIN 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641 >gi|32263408|gb|AAP78453.1| ABC transporter [Helicobacter hepaticus ATCC 51449] gi|32267355|ref|NP_861387.1| ABC transporter [Helicobacter hepaticus ATCC 51449] Length = 405 Score = 179 bits (454), Expect = 2e-43 Identities = 68/443 (15%), Positives = 155/443 (34%), Gaps = 67/443 (15%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ LR L + ++ +G+ +GV ++V +S NG + +++RI Sbjct: 1 MILN-AFILALRQI------KRNFLRAFLTMLGVIIGVGAVVVMISLGNGTTKMISDRIS 53 Query: 61 AVVPHGEIEAVDQPWTNWQEALDH-----------VQKVPGIAAAAPYINFTGLVESGAN 109 ++ + + + L + I A AP + ++ A Sbjct: 54 SLGSNLLLVFPARVMNPSGANLRRNFSLQEAQNLTMLTHEYIQALAPISQGSVTLQYQAQ 113 Query: 110 LRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIM 169 A Q +GVN + S + ++ G +IG+ V L Sbjct: 114 NTATQAQGVNAAFFEVTQWDTSEGRSFEENEYRVGSNVCMIGQSVRKNL----------- 162 Query: 170 IPNSNPEHKLMQPKRVRLHVAGILQLSGQ-----LDHSFAMIPLADAQQYLDMGSS---V 221 NP + ++ + G+L+ GQ ++PL + + ++ V Sbjct: 163 FNEGNPLGQRIRLNTIVCECIGVLESKGQGGMGNDQDDVILLPLKTFLRSVSGSNTLFFV 222 Query: 222 SGIALKMTDVFNANKLVRDAGEVTN----------SYVYIKSWIGTYGYMYRDIQMIRAI 271 + + L+ D ++ +++ + I + + + A Sbjct: 223 NRLMLRAKDGVDSEQMLPALTQALRQVRNVRAGDRDSFEIMDTKQIAETLTSATKRLTAF 282 Query: 272 MYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGS 331 + L + + V I++ ++++V +++ +I +GA + F+ + G Sbjct: 283 LGLIAGVSLVVGGIGIMNIMLVSVTERTKEIGTRMAIGALQSEVLMQFLIESITLSSLGG 342 Query: 332 LCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLS 391 + G+I SL L+ +E +P + + + Sbjct: 343 IIGIIWAFFASLSLSYYME--------------------IPFIFDIPTAIIAFLFSAFIG 382 Query: 392 LLASWYPARRASNIDPARVLSGQ 414 +L + PARRAS ++P L + Sbjct: 383 VLFGYLPARRASKLNPIDALRHE 405 >gi|57167636|ref|ZP_00366776.1| ABC transporter, ATP-binding protein [Campylobacter coli RM2228] gi|57020758|gb|EAL57422.1| ABC transporter, ATP-binding protein [Campylobacter coli RM2228] Length = 641 Score = 174 bits (441), Expect = 5e-42 Identities = 52/425 (12%), Positives = 152/425 (35%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 L I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 LKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLDYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + + ++ L +Q + + + Sbjct: 364 GVNNFAIEGLKLQVGRILNNEDIETNANVAVLDFNAKKNLFPRQ--------KSEDVLGR 415 Query: 179 LMQPKRVRLHVAGILQLSGQ--LDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ + ++ + +P L ++ I +K+ D ++ Sbjct: 416 VVIFNSQPFKIIGVLQKDTEKPIEDNVVRLYMPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQRDFFTFNSDTFKQAITANKRTTTILTASVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GV++ V V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICSMGAILGVLLSVFVIFGFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++L+ ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSVLIGVIFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641 >gi|57238673|ref|YP_179804.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] gi|57167477|gb|AAW36256.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] Length = 372 Score = 132 bits (331), Expect = 3e-29 Identities = 70/398 (17%), Positives = 151/398 (37%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + I Sbjct: 12 KSISFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDTKLSKELKAYGANVMISPKRDENFI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + +++ A P++ + + V G + + + V+ + Sbjct: 72 SNAEYEKIKENLKARALTPFLYDFLNL----GSTSGVVLGTDFRALKITKPFLE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L +K G+ + I PN K ++L + GIL + Sbjct: 127 FSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNPN--------NGKSIKLTIKGILSSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 + D S + PL+ Q D + + + N +++ + N ++ K Sbjct: 179 EFD-SIVLAPLSVVQNLSDRAGINYANAVVY----GNFDEVKAKTQAINNEFIDAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + F SL G G+ ++ + G+ +S I F Sbjct: 294 KLFASECFIVSFFASLIGAFCGIFLA-----------NVFGYLIFNSSIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 ++ VF L+ +L+ + LA+++P +RA I+ L G+ Sbjct: 335 FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE 372 >gi|6969078|emb|CAB73649.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11346957|pir||C81263 probable integral membrane protein Cj1662 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792966|ref|NP_282789.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 372 Score = 129 bits (325), Expect = 1e-28 Identities = 70/398 (17%), Positives = 152/398 (38%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + I Sbjct: 12 KSISFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDIKLSKELKAYGANVMISPKQDENFI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + +++ A P++ + + V G + + + V+ + Sbjct: 72 SNTEYEKIKENLKARALTPFLYDFLNL----GSTSGVVLGTDFRALKITKPFLE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L +K G+ + I PN K ++L + GIL + Sbjct: 127 FSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNPN--------NGKSIKLTIKGILSSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 + D S + PL+ Q D + + + N +++ ++N ++ K Sbjct: 179 EFD-SIVLAPLSVVQNLSDRAGINYANAVVY----GNFDEVKAKTQAISNEFIDAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + F SL G G+ ++ + G+ +S I F Sbjct: 294 KLFASECFIVSFFASLIGAFCGIFLA-----------NVFGYLIFNSSIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 ++ VF L+ +L+ + LA+++P +RA I+ L G+ Sbjct: 335 FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE 372 >gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding protein, putative [Campylobacter coli RM2228] gi|57019826|gb|EAL56509.1| ABC transporter, ATP-binding protein, putative [Campylobacter coli RM2228] Length = 431 Score = 126 bits (316), Expect = 1e-27 Identities = 69/451 (15%), Positives = 151/451 (33%), Gaps = 86/451 (19%) Query: 19 RGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN- 77 R + ++ ++ L +L L+ E+ ++ + + + + Sbjct: 12 RNKIQKFLAFLTCF---LATLLLCTMLNITLSIGDEVTKQLKSYGSNILVLPKGSSLSIE 68 Query: 78 ------------------WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVN 119 L + I A AP++ ++S + + I + G Sbjct: 69 IGNELYEPLKNKNYLEEKNLYMLKDIYWRNNITAFAPFLEGKIEIKSNNSSKKILLYGTY 128 Query: 120 PQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMI 170 Q+ + F+ G + K +I++G+ A +K + ++ Sbjct: 129 FQKAIEIKDDDDFITGIKSLYPYLKVQGKWAKDDSNEIMLGEDFAKNNDLKINGTIQLI- 187 Query: 171 PNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMT- 229 + + GIL + + + PL AQ+ L+ + ++ Sbjct: 188 --------GENKISKEVKIVGILLHANPKMSNKIITPLNLAQELLEKKGLYASAEVRAFT 239 Query: 230 -DVFNANKLVRDAGEVTNSYVYIKSWI-------------------------GTYGYMYR 263 ++ VR GE + W Sbjct: 240 IPESALSEKVRRMGEEKLDQIEYDKWYCSAYVGSIASQISDGLPGADAKALNAISDAQSL 299 Query: 264 DIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYG 323 ++ I+++M + ++ + VA I S + + + +I +L+ LGA I +F Sbjct: 300 VVKKIQSLMAITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGANTFQIYLLFAGEN 359 Query: 324 LLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYV 383 L+ L ++ G I G+ +S ++ I YFI+ + ++ + Sbjct: 360 LIIALVSAVFGFIFGIGLSELISLGIFG--------------YFIN-----IAFIALPLS 400 Query: 384 LVTALLLSLLASWYPARRASNIDPARVLSGQ 414 LV A L+++L P + +N+ PA VL G+ Sbjct: 401 LVFAGLIAILGCLLPIKNIANLSPAGVLYGR 431 >gi|57240580|ref|ZP_00368529.1| probable integral membrane protein Cj1662 [Campylobacter lari RM2100] gi|57018921|gb|EAL55694.1| probable integral membrane protein Cj1662 [Campylobacter lari RM2100] Length = 371 Score = 126 bits (316), Expect = 2e-27 Identities = 66/397 (16%), Positives = 144/397 (36%), Gaps = 37/397 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I I + +G V + + +L+ + A + I D + Sbjct: 12 KSLIFSYKRVCIIFIAVFIGAMVSASFFNIYFDIDTKLSKELKAYGANFIITPKDGEFLG 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 E + ++ A P++ + V GV+ + ++ + Sbjct: 72 MDE-FNQAKENLKAKALTPFLYGF----YNLESSSAVVVGVDFANLKLTKPFIEVLK-GS 125 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L++K G + I P+ + K V++ + IL+ + Sbjct: 126 FSLSDFSEDSAFVGADLAKQLELKIGQELQIYNPSIS--------KIVKVKIKAILRSND 177 Query: 198 QLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGT 257 + D + L AQ+ A+ + D + ++ + + I S + Sbjct: 178 EQDGVLII-SLKKAQELAAKEVINYAQAILLGDYESLDQKAKGLSKANIEAKVIASVSIS 236 Query: 258 YGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRA 317 G + ++ I+A+M L + ++ ++ ++ +TL + + +IA+ LGAK + Sbjct: 237 EGVV---LEKIKALMALISLTILLISSLSVNTTLSAVIFSRKKEIALHLALGAKHREVIK 293 Query: 318 IFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHW 377 +F + L SL G G ++ Y I + Sbjct: 294 LFGAEVFILSLSASLLGAFCGYFLANIFG-------------------YLIFNASIDFRL 334 Query: 378 LDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L VF+ ++ +L+ + AS P ++A I+ L G+ Sbjct: 335 LSVFFAVLISLVFAFFASILPLKKALKINVCENLKGE 371 >gi|34557889|ref|NP_907704.1| ABC TRANSPORT PERMEASE PROTEIN-Involved in lipoprotein release [Wolinella succinogenes DSM 1740] gi|34483607|emb|CAE10604.1| ABC TRANSPORT PERMEASE PROTEIN-Involved in lipoprotein release [Wolinella succinogenes] Length = 424 Score = 124 bits (311), Expect = 6e-27 Identities = 80/457 (17%), Positives = 155/457 (33%), Gaps = 84/457 (18%) Query: 6 SLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNN--RILAVV 63 I G + ++ +++ + +L A+L + L + +EL + + V+ Sbjct: 3 EFRIIKGAIWGNKTQKGLAFLTIF--LASSLIAAMLNLTLGVGDKIAKELRSYGSNIVVL 60 Query: 64 PHG----------EIEAVDQPWTNWQEALDHVQKVP---GIAAAAPYINFTGLVESGANL 110 PHG E + + + L ++++ I AP++ + G Sbjct: 61 PHGGSLSLEIEGQEFQPLQGETYLEESRLKSIKEIFWRNNIVGFAPFLEGRIKDKEGEVW 120 Query: 111 R-------AIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQG 163 I P + L F + +I++G+ +A +K G Sbjct: 121 TLAGTYFDKIVPIADEPSYQTGAKILYPFWSVEGEWIEDDSMTEILLGEELAKNRGLKIG 180 Query: 164 DWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSG 223 D + + L V GIL + + + L+ Q+ LD VS Sbjct: 181 DTIWLGALE--------------LKVKGILH-GFEEGNYKIIASLSLVQKLLDAQGKVSR 225 Query: 224 IALKM-------------TDVFNANKLVRDAG-------------EVTNSYVYIKSWIGT 257 + + D + L D E K+ + Sbjct: 226 VEVSALTVPENDLSIKARRDPEALDALEYDTWYCTAYVSSIAYQIEEEYKGASAKALMKV 285 Query: 258 YGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRA 317 + ++ I+++M + +L + A I S + + + +I +L+ LGA I A Sbjct: 286 SDGESKVVKKIQSLMGVVTLLALLSASIGIASLMASEIHRRKKEIGLLKALGASSLSIYA 345 Query: 318 IFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHW 377 +FV LL L G + G +S+ + + GH + W Sbjct: 346 LFVSESLLVALLSGTLGGLAGYGISMLMA------LGIFGHTL-------------GVSW 386 Query: 378 LDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + + + ALL++L S P R ++ PA VL G+ Sbjct: 387 IILPLTVSFALLVALFGSLLPMRGVVDLLPAEVLYGR 423 >gi|6969077|emb|CAB73648.1| possible ABC transport system permease protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11346807|pir||B81263 probable ABC transport system permease protein Cj1661 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792965|ref|NP_282788.1| possible ABC transport system permease protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 430 Score = 121 bits (303), Expect = 5e-26 Identities = 72/463 (15%), Positives = 151/463 (32%), Gaps = 88/463 (19%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 +++ + + ++ ++ L +L L+ E+ ++ + + Sbjct: 1 MMLAKMIFNSIFKNKIQKFLAFLTCF---LATLLLSTMLNITLSIGDEVTKQLKSYGSNI 57 Query: 67 EIEAVDQPWTN-------------------WQEALDHVQKVPGIAAAAPYINFTGLVESG 107 + + + + I A AP++ +E Sbjct: 58 LVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNITALAPFLEGKITIE-- 115 Query: 108 ANLRAIQVKGVNPQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADAL 158 + + + G Q+ ++ F+ G K +I++G+ A Sbjct: 116 NSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKDDSNEIMLGEDFAKNN 175 Query: 159 KVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG 218 K+K GD + + + + GIL + + + PL AQ L+ Sbjct: 176 KLKLGDTIKFI---------GENNQSKEAKIVGILLHANPKMSNKIIAPLNLAQDLLNKQ 226 Query: 219 SSVSGIALKMT--DVFNANKLVRDAGEVTNSYVYIKSWI--------------------- 255 S ++ ++ VR GE + W Sbjct: 227 GLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQISDGLPGADA 286 Query: 256 ----GTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAK 311 ++ I+++M + ++ + VA I S + + + +I +L+ LGA Sbjct: 287 KALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGAN 346 Query: 312 DGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFL 371 I IF L+ LF +L G I G +S ++ LS YFID Sbjct: 347 TFQIYLIFASENLIVALFAALLGFIFGTALSQIIS--------------LSIFGYFID-- 390 Query: 372 PSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + ++ + + A L++LL P + + + A VL G+ Sbjct: 391 ---IAFVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR 430 >gi|57238672|ref|YP_179803.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] gi|57167476|gb|AAW36255.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] Length = 429 Score = 120 bits (300), Expect = 1e-25 Identities = 69/456 (15%), Positives = 147/456 (32%), Gaps = 88/456 (19%) Query: 8 LIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGE 67 ++ + + ++ ++ L +L L+ E+ ++ + + Sbjct: 1 MLAKMIFNSIFKNKIQKFLAFLTCF---LATLLLSTMLNITLSIGDEVTKQLKSYGSNIL 57 Query: 68 IEAVDQPWTN-------------------WQEALDHVQKVPGIAAAAPYINFTGLVESGA 108 + + + + I A AP++ +E Sbjct: 58 VLPKGSSLSIEIGNELYKPLKNKNYLEEKNLYMIKDIYWRNNITALAPFLEGKITIE--N 115 Query: 109 NLRAIQVKGVNPQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADALK 159 + + + G Q+ ++ F+ G K +I++G+ A K Sbjct: 116 SQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQREWAKDDSNEIMLGEDFAKNNK 175 Query: 160 VKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGS 219 +K GD + ++ + + GIL + + + PL AQ L+ Sbjct: 176 LKLGDTIKLI---------GENNQSKEAKIVGILLHANPKMSNKIIAPLNLAQDLLNKQG 226 Query: 220 SVSGIALKMT--DVFNANKLVRDAGEVTNSYVYIKSWI---------------------- 255 S ++ ++ VR GE + W Sbjct: 227 FYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQISDGLPGADAK 286 Query: 256 ---GTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKD 312 ++ I+++M + ++ + VA I S + + + +I +L+ LGA Sbjct: 287 ALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGANT 346 Query: 313 GLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLP 372 I IF L+ LF +L G I G +S ++ LS YFID Sbjct: 347 FQIYLIFAGENLIVALFAALFGFIFGTALSQIIS--------------LSIFGYFID--- 389 Query: 373 SELHWLDVFYVLVTALLLSLLASWYPARRASNIDPA 408 + ++ + + A L++LL P + + + A Sbjct: 390 --IAFIALPLSFIFAGLIALLGCLLPIKNITQLSAA 423 >gi|57168778|ref|ZP_00367909.1| permease protein, putative [Campylobacter coli RM2228] gi|57019825|gb|EAL56508.1| permease protein, putative [Campylobacter coli RM2228] Length = 372 Score = 116 bits (291), Expect = 1e-24 Identities = 68/398 (17%), Positives = 150/398 (37%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + IE + Sbjct: 12 KSIAFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDTKLSKELKAYGANVIIEPKNDKELI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + + +K A P++ + + V G + + + V+ + Sbjct: 72 LNQDYEEGKKNLKARALTPFLYTFLNL----GSTSGVVLGTDFRALKITKPFIE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G ++ L +K G+ + I P + K L + GIL + Sbjct: 127 FSLSDFDENSAFLGINLSKQLGLKVGNELQIYNPENGKTTK--------LTIKGILLSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 +LD S + PL+ Q D + + N +++ ++N + K Sbjct: 179 ELD-SIVLAPLSVVQNLSDTFGIQYANAVVY----GNFDEINTKTKNISNESINAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLDKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + LF S+ G G+ ++ + G+ ++ I F Sbjct: 294 KLFACEYFIISLFASIIGAFCGIFLA-----------NIFGYLIFNASIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + +F L+ +L + LA+++P ++A I+ L G+ Sbjct: 335 FKAIFMALIVSLFFAFLAAFFPIKKALKINVCENLKGE 372 >gi|34557888|ref|NP_907703.1| INTEGRAL MEMBRANE PROTEIN-Permease Component, involved in lipoprotein release [Wolinella succinogenes DSM 1740] gi|34483606|emb|CAE10603.1| INTEGRAL MEMBRANE PROTEIN-Permease Component, involved in lipoprotein release [Wolinella succinogenes] Length = 381 Score = 111 bits (277), Expect = 4e-23 Identities = 65/402 (16%), Positives = 144/402 (35%), Gaps = 40/402 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEA--VDQPW 75 + S + + +ALG V ++ + ++ + A + + Sbjct: 15 KSLRFSFTQSAVIFVAVALGACVSGAFINVYLDIDSKMRKELKAYGANFIFAPLVQKEEL 74 Query: 76 TNWQEALDHVQKV---PGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSF 132 + +E ++ + A PY+ + G + GV+ + Sbjct: 75 SFSEELYHKLKAQIEPAKLMGATPYLYGLVRLSLGE----ALIAGVDFAGMKETKPFLE- 129 Query: 133 VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGI 192 V ++ N E+ + G +A +++K G V ++ S + + GI Sbjct: 130 VVHGSYINVDFDERNALAGIDLAKKMELKVGSVVDLVNEKSGFAT--------SVRIKGI 181 Query: 193 LQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIK 252 + + D + L AQ+ L V + + + +L + V K Sbjct: 182 VSSGDKEDG-LLFVSLPLAQKALGREGEVHLAEAVI--LGDFRELGELGERLREEGVLAK 238 Query: 253 SWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKD 312 ++ I+ +M L V+ + + +TL + ++ +IA+LR +GA Sbjct: 239 PLARISLSEGIVLEKIKLLMALVAFTVLLITSMCVNTTLSSIIFARTKEIALLRAMGASR 298 Query: 313 GLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLP 372 + +F L+ L SL G ++G++++ L I Sbjct: 299 AEVVKLFGSETLIMTLSASLAGALLGILLAQWLGLAIFGSG------------------- 339 Query: 373 SELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + +L + + +LL + LA++YP +R ++ A +L G+ Sbjct: 340 IDFRFLSIPLAIGISLLFAALAAYYPIKRTLHLGVANILRGE 381 >gi|57240581|ref|ZP_00368530.1| probable ABC transport system permease protein Cj1661 [Campylobacter lari RM2100] gi|57018922|gb|EAL55695.1| probable ABC transport system permease protein Cj1661 [Campylobacter lari RM2100] Length = 430 Score = 99.7 bits (247), Expect = 1e-19 Identities = 72/459 (15%), Positives = 154/459 (33%), Gaps = 84/459 (18%) Query: 8 LIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNN---------- 57 I + ++L+++ + L +L + L N +EL + Sbjct: 4 KIVKNSIFQNKIQKSLALLTIF--LATLLMATMLNLTLGIGNEIAKELRSYGSNILVLPK 61 Query: 58 --RILAVVPHGEIEAVDQPWTNWQEALDHVQKVP---GIAAAAPYINFTGLVESGA-NLR 111 + V E + + L ++++ I A AP+++ +++ N Sbjct: 62 GASLSVEVGSKIYEPLKNQNFLEENKLHTIKEIFWRNNINAFAPFLDIQVKIQTPNANYE 121 Query: 112 AIQVKGVNPQQEQRLSALPSFVQG----------DAWRNFKAGEQQIIIGKGVADALKVK 161 I + G + ++ F G +I++GK +A +K Sbjct: 122 NISLVGTYFDKAIKVQDDDDFYAGIKELYKYSQIKGNYPKDDSLDEIMLGKDLAQKYDLK 181 Query: 162 QGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSV 221 D +S+ + + ++ + GI+ L+ Q + + L AQ+ Sbjct: 182 INDEISLTQND----------QIFKVKIIGIIDLT-QAFSNKIITSLLLAQKLSKKEGLF 230 Query: 222 SGIALKM---TDVFNANKLVRDAGEVTNSYV-------YIKSWIGTYGYMYR-------- 263 + + + A K RD + Y+ S ++ Sbjct: 231 AKAEVSALTIPENDLAQKARRDVDSLDQLEYDQWYCTAYVSSIAYQIAEDFKGASTKVVS 290 Query: 264 --------DIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLI 315 + I+++M + ++ + VA I S + + + +I +L+ LGA I Sbjct: 291 AISDAESLIVSKIQSLMAVVSIICLIVASIAISSLMSADIFRRKSEIGLLKALGASTLQI 350 Query: 316 RAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSEL 375 IF G++ L G++ G + GV VS + I + Sbjct: 351 YMIFALEGVVVALIGAVFGFVFGVGVSEAIALSIFDHA-------------------IAI 391 Query: 376 HWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 W+ + L A+L+ L + + S + + VL G+ Sbjct: 392 SWIILPICLFFAVLIVFLGCLFSIKGISKLSTSEVLYGK 430 >gi|34557053|ref|NP_906868.1| hypothetical protein WS0637 [Wolinella succinogenes DSM 1740] gi|34482768|emb|CAE09768.1| hypothetical protein [Wolinella succinogenes] Length = 393 Score = 77.3 bits (189), Expect = 8e-13 Identities = 58/417 (13%), Positives = 125/417 (29%), Gaps = 29/417 (6%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M+ SL I L R + +S++ + I + A I+ + + +R +I Sbjct: 1 MSFNPSL-IALSI--ASLRRRALKNLSLLIALVIVIFTASSILFTA--DSIQRVNKEQIG 55 Query: 61 AVVPHGEIEAVDQPWTNWQE-ALDHVQKVPGIAAAAPYINFTGLVESG---ANLRAIQVK 116 + V +E +D + ++ G+ A I + Sbjct: 56 RLPDITMQRMVGGRLETIEEGRVDELLEIEGVEWAIGRIWGYYFFPHAGLQNGGANFTLL 115 Query: 117 GVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPE 176 G++P + + + E ++ + + + S+ Sbjct: 116 GIDPYYGSE----ENHRLPEEFLEILPQESGVM-------HVGLGVKRAMEKSFSPSSLA 164 Query: 177 HKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNAN 235 + RL + +L+ G D F ++P +A+ L M V+ I LK+++ Sbjct: 165 FVSPGGELWRLKLGLVLEEVGLYD--FILLPKEEARAILGMEEGRVTDIVLKVSNPKEVA 222 Query: 236 KLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAV 295 + E I + I + + V I Sbjct: 223 TIASKLIERYPDS-KILTKEQITLAYESLIGYKSGLFLALFITVFLAIGIVIYEKASGIS 281 Query: 296 KDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKL 355 +++ +I++ + +G G + + L G++ L L Sbjct: 282 EEERREISLQKAIGWSVGEVMTLKFLEHGWLILLALFLGLLGAYFFVYGLGS-----PYL 336 Query: 356 IGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLS 412 SSD+ + ++ + L L A P R++ D V+ Sbjct: 337 SQIFISSSDLALPFSPRLGAGFFEILTYGLFGAFLYLSAVMIPVWRSAMSDAGEVIR 393 >gi|34556820|ref|NP_906635.1| hypothetical protein WS0389 [Wolinella succinogenes DSM 1740] gi|34482535|emb|CAE09535.1| hypothetical protein [Wolinella succinogenes] Length = 369 Score = 68.9 bits (167), Expect = 2e-10 Identities = 53/393 (13%), Positives = 123/393 (31%), Gaps = 53/393 (13%) Query: 28 VISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAV--DQPWTNWQEALDHV 85 + S + V +L L + + +L + P +E + + +E L+ V Sbjct: 22 LFSFLIFTFIVTLLSAVLFISDSLQSDLVESV-KFQPDIVVENTLAGRAFKLSEEDLEGV 80 Query: 86 QKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGE 145 ++ G++A + F Q W K+ Sbjct: 81 AELAGVSAVEGVVEGR----------------------------YYFAQQRIWFEIKSDP 112 Query: 146 ----QQIIIGKGVADALKV-KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLD 200 Q+ +G GV +A++ D + P K++ + L Sbjct: 113 SLSINQMSVGAGVREAMRAQHYEDEFNFFTPKGKFTLKIINTHSP---------SAHLLS 163 Query: 201 HSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYG 259 +S + +A+ L G S + + + + + ++ Sbjct: 164 NSAIYVHPINARAILGFGLEEYSKLYVTVPNPNEVGDIALKIDQLLP-TAKATPKEDVMA 222 Query: 260 YMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIF 319 I + ++ + + + + + +K +IA+LR++G I A+ Sbjct: 223 GYQHLFYYKGGIFMILYLVCMVSFLILLKNQIGLVYGEKKREIAILRSIGYGIREIIAMK 282 Query: 320 VWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLD 379 + L GV+I V + L+ FL S++ L + Sbjct: 283 FIQNGVVALSAFGMGVLIAYV------YVFVAQAPLLRLIFLGSELSHRVELTPIVDLNL 336 Query: 380 VFYVLVTALLLSLLASWYPARRASNIDPARVLS 412 +F + V +++ + P+ + + D + + Sbjct: 337 LFLLFVFSVIPFMAFVILPSWKVAIADMSEAVR 369
Score E Sequences producing significant alignments: (bits) Value gi|57242035|ref|ZP_00369975.1| conserved hypothetical integ... 234 3e-60 gi|57237769|ref|YP_179017.1| permease, putative [Campylobac... 223 8e-57 gi|34557623|ref|NP_907438.1| hypothetical protein WS1259 [W... 222 1e-56 gi|6968378|emb|CAB73198.1| putative integral membrane prote... 221 3e-56 gi|15611791|ref|NP_223442.1| hypothetical protein jhp0724 [... 221 5e-56 gi|32261866|gb|AAP76915.1| conserved hypothetical protein [... 216 2e-54 gi|57240551|ref|ZP_00368500.1| conserved hypothetical integ... 214 4e-54 gi|2313911|gb|AAD07831.1| conserved hypothetical integral m... 214 4e-54 gi|34557766|ref|NP_907581.1| PROBABLE TRANSMEMBRANE ATP-BIN... 205 2e-51 gi|57240328|ref|ZP_00368277.1| ABC transporter, ATP-binding... 187 7e-46 gi|6968074|emb|CAB75243.1| ABC-type transmembrane transport... 186 1e-45 gi|57238197|ref|YP_178722.1| macrolide-specific efflux prot... 185 2e-45 gi|57167894|ref|ZP_00367034.1| probable integral membrane p... 183 1e-44 gi|57242014|ref|ZP_00369954.1| ABC transporter, ATP-binding... 182 2e-44 gi|32263408|gb|AAP78453.1| ABC transporter [Helicobacter he... 179 2e-43 gi|57167636|ref|ZP_00366776.1| ABC transporter, ATP-binding... 174 5e-42 gi|57238673|ref|YP_179804.1| ABC transporter, permease prot... 132 3e-29 gi|6969078|emb|CAB73649.1| putative integral membrane prote... 129 1e-28 gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding... 126 1e-27 gi|57240580|ref|ZP_00368529.1| probable integral membrane p... 126 2e-27 gi|34557889|ref|NP_907704.1| ABC TRANSPORT PERMEASE PROTEIN... 124 6e-27 gi|6969077|emb|CAB73648.1| possible ABC transport system pe... 121 5e-26 gi|57238672|ref|YP_179803.1| ABC transporter, permease prot... 120 1e-25 gi|57168778|ref|ZP_00367909.1| permease protein, putative [... 116 1e-24 gi|34557888|ref|NP_907703.1| INTEGRAL MEMBRANE PROTEIN-Perm... 111 4e-23 gi|57240581|ref|ZP_00368530.1| probable ABC transport syste... 100 1e-19 gi|34557053|ref|NP_906868.1| hypothetical protein WS0637 [W... 77 8e-13 gi|34556820|ref|NP_906635.1| hypothetical protein WS0389 [W... 69 2e-10
>gi|57242035|ref|ZP_00369975.1| conserved hypothetical integral membrane protein [Campylobacter upsaliensis RM3195] gi|57017227|gb|EAL54008.1| conserved hypothetical integral membrane protein [Campylobacter upsaliensis RM3195] Length = 397 Score = 234 bits (597), Expect = 3e-60 Identities = 90/413 (21%), Positives = 187/413 (45%), Gaps = 17/413 (4%) Query: 3 MPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAV 62 M L+ + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R + Sbjct: 1 MSLTRYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFQKRFFVM 60 Query: 63 VPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQ 122 I E + +++ +PY++ + + V GVN ++ Sbjct: 61 NYPITILPKFY-APVDDEFVAELRREFSHLLFSPYLSTQVIAKGDNRFEGGVVFGVNFEE 119 Query: 123 EQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQP 182 E+++ + V DA ++ I+IG +A+ ++K+ D +S++ N NP + P Sbjct: 120 EKKI----NEVVKDALKDTNLSSYDILIGGALAEEFRLKKNDKLSLIFSNLNPSGFSLTP 175 Query: 183 KRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDA 241 R V D ++ + ++ L + G+ + + F + + Sbjct: 176 TTKRFDVKAKFNSGLIFYDKAYMYVKAETLRKVLGVKEGYDGVHIYSENAF---EDIAKL 232 Query: 242 GEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGD 301 W + +++ + +++ ++L+I VA NI+S+L+M V ++ + Sbjct: 233 RTYLGQDYAAIGWWEQNQNFFSALELEKRALFIVLMLIILVAGLNIISSLLMIVMNRRSE 292 Query: 302 IAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFL 361 IA+L LGA I+ F G+L G G +CGVI+ ++ W+ L Sbjct: 293 IALLLALGASKKEIKKSFFALGMLIGGSGMVCGVILAF--------VVLWLLGNFDLVSL 344 Query: 362 SSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 +D+Y LP +L LD L+ AL++ L+S+YPA++A+ ++ L + Sbjct: 345 PADVYGTSKLPLDLSVLDFVLTLMGALVIIALSSFYPAKKATEVNILDTLRNE 397
>gi|57237769|ref|YP_179017.1| permease, putative [Campylobacter jejuni RM1221] gi|57166573|gb|AAW35352.1| permease, putative [Campylobacter jejuni RM1221] Length = 401 Score = 223 bits (568), Expect = 8e-57 Identities = 91/417 (21%), Positives = 181/417 (43%), Gaps = 19/417 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R Sbjct: 1 MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFEKRFF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I E +D ++K +PYI+ +V+ + GVN Sbjct: 61 VMNYPITILPKFY-APVNDEFIDELRKTFPNLLFSPYISTQVVVKGDNRFEGGVLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 E+++ + V A ++ I++G + D + + D +S++ N NP + Sbjct: 120 NDEKKI----NEVVAKALKDENLSGFDILVGSALTDEFGLHKNDKLSLIFSNLNPSGFSL 175 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSS--VSGIALKMTDVFNANKL 237 P+ R V D ++ + ++ L M + GI + + F K Sbjct: 176 IPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPNYDGIHVYSDNAF---KD 232 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 V + W + +++ + +++ ++L+I VA NIVS+L+M V + Sbjct: 233 VEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIILVASLNIVSSLLMIVMN 292 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L LGA ++ F G+L G G + GV++ L Sbjct: 293 RRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAFFALWLLGN--------FD 344 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y LP +L +D +V AL++ L+S+YPA++A+ I+ L + Sbjct: 345 IVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQINILDTLRNE 401
>gi|34557623|ref|NP_907438.1| hypothetical protein WS1259 [Wolinella succinogenes DSM 1740] gi|34483340|emb|CAE10338.1| conserved hypothetical protein [Wolinella succinogenes] Length = 403 Score = 222 bits (567), Expect = 1e-56 Identities = 92/412 (22%), Positives = 182/412 (44%), Gaps = 17/412 (4%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNGF+++ ++ + Sbjct: 7 LIPYLTKRYLRFDKSQPFISIAAILAFAGVAIGVMVLIVAMAIMNGFDKDFERKLFTMNY 66 Query: 65 HGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQ 124 + +E L ++ +PY+ + +SG + V GV+ ++E+ Sbjct: 67 PLTLYP-KVSQGISEELLKELESSFPHLLFSPYLRTQAISKSGDAMEGAVVFGVDFEREK 125 Query: 125 RLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKR 184 +++ + + ++ +G I++G + + + + + ++ P + P Sbjct: 126 QINEVIAEALKESEI---SGRFDILVGSELRNEFFLARDSKLMLIFTQLEPTGLSLSPTM 182 Query: 185 VRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLVRDAG 242 R V G + D + L + GI + + K + Sbjct: 183 KRFDVKGFFRSGLTAYDKGYIFASLEAIRAIKKKEEGYYDGIHVFAKEPM---KEIDSIR 239 Query: 243 EVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDI 302 I W G + +Q+ + +++ ++L+I +A NI+S+L+M V ++ +I Sbjct: 240 AKLPLEAGIVGWWQQNGNFFAALQLEKRALFIVLMLIILIASLNIISSLLMTVMNRRREI 299 Query: 303 AVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLS 362 A+L TLGA I+ F G GL G GV++ I W+ L Sbjct: 300 ALLLTLGATQSEIKRTFFRLGNTIGLSGIALGVLLA--------GIALWVLSTFPIISLP 351 Query: 363 SDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 +D+Y LP EL W+D +L+ + L+ LL+S+YPA +A+ IDP VL + Sbjct: 352 ADVYGSSKLPLELSWIDFGMILLGSTLIVLLSSYYPAYQATKIDPLSVLRNE 403
>gi|6968378|emb|CAB73198.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11279732|pir||D81368 probable integral membrane protein Cj0941c [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792270|ref|NP_282093.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 401 Score = 221 bits (564), Expect = 3e-56 Identities = 89/417 (21%), Positives = 180/417 (43%), Gaps = 19/417 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + ++L +++ +G+ +G+ VL+V ++ MNGF++E R Sbjct: 1 MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVAMAIMNGFDKEFEKRFF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I E +D ++K +PY++ +V+ + GVN Sbjct: 61 VMNYPITILPKFY-APVNDEFIDELRKTFPNLLFSPYLSTQVVVKGDNRFEGGVLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 E+++ + V A ++ I++G + D + + D +S++ N NP + Sbjct: 120 NDEKKI----NEVVAKALKDENLSGFDILVGSALTDEFGLHKNDKLSLIFSNLNPSGFSL 175 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSS--VSGIALKMTDVFNANKL 237 P+ R V D ++ + ++ L + + GI + + F K Sbjct: 176 VPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPNYDGIHVYSDNAF---KD 232 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 V + W + +++ + +++ ++L+I VA NIVS+L+M V + Sbjct: 233 VEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIILVASLNIVSSLLMIVMN 292 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L LGA ++ F G+L G G + GV++ L Sbjct: 293 RRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAFFALWLLGN--------FD 344 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L D+Y LP +L +D +V AL++ L+S+YPA++A+ I+ L + Sbjct: 345 IVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQINILDTLRNE 401
>gi|15611791|ref|NP_223442.1| hypothetical protein jhp0724 [Helicobacter pylori J99] gi|4155280|gb|AAD06298.1| putative [Helicobacter pylori J99] gi|7464818|pir||D71897 hypothetical protein jhp0724 - Helicobacter pylori (strain J99) Length = 410 Score = 221 bits (562), Expect = 5e-56 Identities = 84/417 (20%), Positives = 187/417 (44%), Gaps = 13/417 (3%) Query: 2 AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILA 61 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNG +E ++ Sbjct: 3 NRSLIFFLIKRYLRFDKSQPFISITALLAFFGVAVGVMVLIVAMAIMNGMSKEFEKKLFV 62 Query: 62 VVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQ 121 + + P+ +E + ++K +PY+ ++S ++ V GV+ Sbjct: 63 MNYPLTLYTTS-PYGISEEVVQALEKKFPNLLFSPYLQTQSPIKSAHSMNGGVVFGVDFS 121 Query: 122 QEQRLSALPSF-VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 +E+ ++ + + ++ + +I+GK + +L + + P + Sbjct: 122 KERHINEVLNDALKNINENDLFKNPFNLIVGKSLRYSLNLDLNQKADLFFTELEPTGLTL 181 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDV-FNANKL 237 P R + G D S+ L + G+ + + KL Sbjct: 182 SPIMKRFTIKGDFDSGLKSYDMSYMYASLQAISAIRRLPLGLYDGVHVYSKTPMKDIEKL 241 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 + + + I+ W G + +++ + +++ ++L+I +A NI+S+L+M V + Sbjct: 242 RNALKTINHHGIGIEGWWQQNGNFFSAMELEKRALFIVLMLIILMASLNIISSLLMVVMN 301 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L ++G+ I+ F + G + GL G + GV++ + L+ + Sbjct: 302 RRKEIALLFSMGSSQKEIQKTFFYLGNIIGLGGVILGVVLAFISMYLLS--------VFP 353 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y I+ LP +L +D L+ ++++ L+S+YP+++AS ID VL + Sbjct: 354 IISLPADVYGINTLPLDLSLMDFTLTLIGSVIIVALSSYYPSKKASAIDALSVLRNE 410
>gi|32261866|gb|AAP76915.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] gi|32265817|ref|NP_859849.1| hypothetical protein HH0318 [Helicobacter hepaticus ATCC 51449] Length = 417 Score = 216 bits (549), Expect = 2e-54 Identities = 91/423 (21%), Positives = 185/423 (43%), Gaps = 22/423 (5%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L + R+ R + +S+ ++++ G+ +GV VL V ++ MNG +E ++ + Sbjct: 4 LIFYLLPRYLRFDKTQPFISITALLAFFGVGIGVMVLCVAMAIMNGMTKEFERKLSIMNY 63 Query: 65 HGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQ 124 I + + L ++ +PY+ + + + G + A V GV+ Q E Sbjct: 64 PLSIYSTTYEGVD-ANILQALKAHFPQFLFSPYLRYQAVGKIGNTMSAAMVFGVDMQAES 122 Query: 125 RLSAL----------PSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSN 174 +++A+ +F E I+IGK + + ++ GD + + Sbjct: 123 QINAVVKKAFKTSQNSDTEFKKNIESFMQKEFSILIGKSMEENFGLESGDKLDLFFTQLE 182 Query: 175 PEHKLMQPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMGSSV-SGIALKMTDV- 231 P P R +AG + D ++ L+ Q+ + + GI + + Sbjct: 183 PSGFSYTPINKRFSIAGFFESGLRAYDEAYVYTNLSALQKIRHLNEGIYDGIHIYTPNPM 242 Query: 232 FNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTL 291 + + + ++ W G + +++ + +++ ++L+I +A NI+S+L Sbjct: 243 QDIHSISDFLNTQFPYRAGVEGWWQQNGNFFSALELEKRALFIVLMLIIVMAALNIISSL 302 Query: 292 VMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEW 351 +M V ++ +IA+L +LGA I++IF W G GL G G+I+ + L Sbjct: 303 LMVVMNRRKEIALLLSLGASRQEIKSIFFWVGNTIGLSGIALGIILTGIAMYVLDT---- 358 Query: 352 IEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVL 411 L +D+Y LP +L +D ++ A+ + L+S+YPAR+AS +D +VL Sbjct: 359 ----FPIISLPADVYGSSKLPLDLSLIDFLLTIIGAIFIVCLSSYYPARKASLVDTLQVL 414 Query: 412 SGQ 414 + Sbjct: 415 RNE 417
>gi|57240551|ref|ZP_00368500.1| conserved hypothetical integral membrane protein [Campylobacter lari RM2100] gi|57018892|gb|EAL55665.1| conserved hypothetical integral membrane protein [Campylobacter lari RM2100] Length = 400 Score = 214 bits (545), Expect = 4e-54 Identities = 92/416 (22%), Positives = 183/416 (43%), Gaps = 18/416 (4%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ R + + L +++ +G+++G+ VL+V ++ MNGF++E ++ Sbjct: 1 MQKSIPRYLLFKYLRFDKDQPFIMLSKILAFLGVSIGLCVLLVAMAIMNGFDKEFERKLF 60 Query: 61 AVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNP 120 + I + + + K P + +PYI + + L + GVN Sbjct: 61 TMNYPITILPRFGASVDDKILQELRIKFPNLL-FSPYIATQVIARNDLKLEGGMLFGVNF 119 Query: 121 QQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 + E+++ + V A N K I++GKG+ D + + ++++ N N + Sbjct: 120 EDEKKI----NEVIAQALENKKLDNFDILVGKGLKDEFGLDYNEKITLIFSNLNASGLSL 175 Query: 181 QPKRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLV 238 P+ R V D ++ + + L S G+ + F + + Sbjct: 176 IPQVKRFDVKADFSSGLLAYDKAYMYTDVKALAKILSYPQGSYDGVHVYSNKPF---EDI 232 Query: 239 RDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDK 298 + + + W G + + + + +++ ++L+I VA NIVS+L+M V ++ Sbjct: 233 KQIEDFLGARYASIGWWEQNGNFFAALALEKRALFIVLMLIILVASLNIVSSLLMIVMNR 292 Query: 299 SGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGH 358 +IA+L +LGA I+ F G L G G + GVI+ I W+ Sbjct: 293 RSEIALLLSLGASKLEIKKTFFSLGFLIGGSGIIAGVILA--------AIALWVLGNFDI 344 Query: 359 QFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L SD+Y + LP EL +D L A+++ L+S+YPA++A+ +D L + Sbjct: 345 ISLPSDVYGMSKLPLELSLVDFCATLFGAIVIVGLSSYYPAKKATQVDILDTLRNE 400
>gi|2313911|gb|AAD07831.1| conserved hypothetical integral membrane protein [Helicobacter pylori 26695] gi|7463943|pir||C64618 conserved hypothetical integral membrane protein HP0787 - Helicobacter pylori (strain 26695) gi|15645406|ref|NP_207580.1| conserved hypothetical integral membrane protein [Helicobacter pylori 26695] Length = 410 Score = 214 bits (545), Expect = 4e-54 Identities = 85/417 (20%), Positives = 186/417 (44%), Gaps = 13/417 (3%) Query: 2 AMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILA 61 L + R+ R + +S+ ++++ G+A+GV VLIV ++ MNG +E ++ Sbjct: 3 NRSLIFFLIKRYLRFDKSQPFISITALLAFFGVAVGVMVLIVAMAIMNGMSKEFEKKLFV 62 Query: 62 VVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQ 121 + + P+ +E + ++K +PY+ L++S ++ V GV+ Sbjct: 63 MNYPLTLYTTS-PYGISEEVVQALEKKFPNLLFSPYLQTQSLIKSAHSMNGGVVFGVDFS 121 Query: 122 QEQRLSALPSF-VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLM 180 +E+R++ + + ++ + +I+GK + +L + + P + Sbjct: 122 KEKRINEVLNDALKNINENDLFKNPFNLIVGKSLRYSLNLDLNQKADLFFTELEPTGLTL 181 Query: 181 QPKRVRLHVAGILQLS-GQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDV-FNANKL 237 P R + G D S+ L + G+ + + L Sbjct: 182 SPIMKRFTIKGDFDSGLKSYDMSYMYAGLQAISAIRRLPLGLYDGVHVYSKTPMKDIEIL 241 Query: 238 VRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKD 297 + + + I+ W G + +++ + +++ ++L+I +A NI+S+L+M V + Sbjct: 242 RNALKTINHHGIGIEGWWQQNGNFFSAMELEKRALFIVLMLIILMASLNIISSLLMVVMN 301 Query: 298 KSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIG 357 + +IA+L ++G+ I+ F + G + GL G GV++ + L+ + Sbjct: 302 RRKEIALLFSMGSSQKEIQKTFFYLGNIIGLGGVALGVVLAFLSMYLLS--------VFP 353 Query: 358 HQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L +D+Y I+ LP L +D L+ ++++ L+S+YP+++AS ID VL + Sbjct: 354 IISLPADVYGINTLPLNLSLMDFTLTLIGSVIIVGLSSYYPSKKASTIDALSVLRNE 410
>gi|34557766|ref|NP_907581.1| PROBABLE TRANSMEMBRANE ATP-BINDING ABC TRANSPORTER PROTEIN [Wolinella succinogenes DSM 1740] gi|34483483|emb|CAE10481.1| PROBABLE TRANSMEMBRANE ATP-BINDING ABC TRANSPORTER PROTEIN [Wolinella succinogenes] Length = 643 Score = 205 bits (522), Expect = 2e-51 Identities = 67/429 (15%), Positives = 159/429 (37%), Gaps = 53/429 (12%) Query: 5 LSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVP 64 L L ++ + R M +V++ +GI +GVA +IV L+ +G + + RI A+ Sbjct: 249 LELFEAMKMAF--RSLKMNLFRTVLTLLGIVIGVASVIVMLAIGDGAKNAVLERISAMGT 306 Query: 65 HGEIEAVDQPW--------TNWQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVK 116 + + P T E ++ + ++ I AA P + G N ++ + Sbjct: 307 NILVIRPGMPNSRGFSNIATLIPEDMEAIMELDNIIAAMPENKKSVTTRYGNNDQSTSLN 366 Query: 117 GVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPE 176 + + + + K+ + +++GK V AL + Sbjct: 367 ATSSHFTKVRNWPLGKGVFFTEEDEKSYAKVVVLGKTVEKAL-----------FGEEDAL 415 Query: 177 HKLMQPKRVRLHVAGILQ-----LSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDV 231 + + + + G++ SG+ + ++P +L + I + + D+ Sbjct: 416 GRFILVDNIMFQIIGVMSNRGASASGEDEDDVILVPYTTGSLHLIGQKFLRNITVAVDDL 475 Query: 232 FNANKLVRDAGEVT------NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACF 285 + R+ + I++ + + + ++ + + V Sbjct: 476 SRMGETEREIHSLLLARHGGIEDFRIRNMASLIEDVTQTQNTLTILLGSIAAISLLVGGI 535 Query: 286 NIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQL 345 +++ ++++V +++ +I + GA+ I F+ ++ G L GV+IG+ VS + Sbjct: 536 GVMNIMLVSVTERTKEIGIRIATGARMRHILQQFLIEAVVVSALGGLIGVVIGLGVSALI 595 Query: 346 TPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNI 405 + P + + + A + LL + PAR+A+ + Sbjct: 596 EGL---------------------GTPVYYSLMPIVWAFGCAFVTGLLFGYLPARKAARL 634 Query: 406 DPARVLSGQ 414 DP L+ + Sbjct: 635 DPVVALASE 643
>gi|57240328|ref|ZP_00368277.1| ABC transporter, ATP-binding protein [Campylobacter lari RM2100] gi|57018669|gb|EAL55442.1| ABC transporter, ATP-binding protein [Campylobacter lari RM2100] Length = 643 Score = 187 bits (474), Expect = 7e-46 Identities = 56/411 (13%), Positives = 146/411 (35%), Gaps = 47/411 (11%) Query: 24 SLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTNWQE--- 80 L S+++ +GI +G+A ++ ++ G ++ + I ++ + + + + Sbjct: 260 KLRSLLTMLGIIIGIASVVCVVALGLGAQQNILASISSIGTNTIEVVSGRGLGDIRSGRT 319 Query: 81 -----ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQG 135 L + +P + A + G+V N ++ GV P + + + Sbjct: 320 RLNLSDLKTLSSLPYLEAVEADVGKIGVVTYKNNSLQARIYGVGPNHLRLRGFVMVDGRF 379 Query: 136 DAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQL 195 + K II + L + K + + L + G+L+ Sbjct: 380 INNEDIKDNTNICIIDENALRILFDNISAK--------DVLGKSVIFNKQPLTIVGVLKK 431 Query: 196 -----SGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVT--- 245 + D + P + + I K+ D N ++ Sbjct: 432 ERDNKGFRADENTIKIYTPYTTLMNKITGDKQIRAIVTKVKDEVNPTLAEEAMVKILEIK 491 Query: 246 --NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIA 303 + + + + + ++ V+ + V +++ ++++V +++ +I Sbjct: 492 RGKKDFFTINSDAIKNAIEENTATLTLLISSIAVVSLIVGGIGVMNIMLVSVSERTREIG 551 Query: 304 VLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSS 363 V +GA+ I F+ +L G++ GV++ ++ + + Sbjct: 552 VRMAIGARKEDILMQFLIEAVLICSLGAIFGVMLSFIIIEVFNSLNFGFTMI-------- 603 Query: 364 DIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L VF L++++L+ ++ ++PA+ A+N++P LS + Sbjct: 604 -----------LSLNSVFLGLLSSVLIGVVFGFFPAKNAANLNPISALSKE 643
>gi|6968074|emb|CAB75243.1| ABC-type transmembrane transport protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11278932|pir||F81408 ABC-type transmembrane transport protein Cj0607 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15791967|ref|NP_281790.1| ABC-type transmembrane transport protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 641 Score = 186 bits (472), Expect = 1e-45 Identities = 52/425 (12%), Positives = 148/425 (34%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 FKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLEYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + K ++ L + + N + Sbjct: 364 GVNNFAIEGLRIDAGRILNNDDVKNSTNVAVLDFNAKKNLFPDE--------KSENILGR 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ ++ + IP L ++ I +K+ D ++ Sbjct: 416 VVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQKDFFTFNSDTFKQAITANKRTTTILTACVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GVI+ + V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICTIGAILGVILSIFVIFAFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++ + ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSMFIGVVFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641
>gi|57238197|ref|YP_178722.1| macrolide-specific efflux protein macB [Campylobacter jejuni RM1221] gi|57167001|gb|AAW35780.1| macrolide-specific efflux protein macB [Campylobacter jejuni RM1221] Length = 641 Score = 185 bits (470), Expect = 2e-45 Identities = 52/425 (12%), Positives = 148/425 (34%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 FKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLEYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + K ++ L + + N + Sbjct: 364 GVNNFAIEGLRIDAGRILNNDDVKNSTNVAVLDFNAKKNLFPDE--------KSENILGR 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ ++ + IP L ++ I +K+ D ++ Sbjct: 416 VVLFNSQSFKIIGVLQKDTDKPIEDNVVRLYIPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQKDFFTFNSDTFKQAITANKRTTTILTACVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GVI+ + V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICTIGAILGVILSIFVIFAFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++ + ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSMFIGVVFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641
>gi|57167894|ref|ZP_00367034.1| probable integral membrane protein Cj0941c [Campylobacter coli RM2228] gi|57021016|gb|EAL57680.1| probable integral membrane protein Cj0941c [Campylobacter coli RM2228] Length = 354 Score = 183 bits (464), Expect = 1e-44 Identities = 81/370 (21%), Positives = 159/370 (42%), Gaps = 19/370 (5%) Query: 48 MNGFERELNNRILAVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTGLVESG 107 MNGF++E R + I + + + +++ +PYI+ + ++ Sbjct: 1 MNGFDKEFEKRFFVMNYPITIVPKFYSPMD-DDLVTELKREFPHLLFSPYISTQVVAKAD 59 Query: 108 ANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVS 167 + GVN E ++ + V A ++ I++G +AD L + + D +S Sbjct: 60 NRFEGGVLFGVNFNDEVKI----NEVVAKALKDENLSGFDILVGSVLADELNLHKNDKLS 115 Query: 168 IMIPNSNPEHKLMQPKRVRLHVAGILQLSG-QLDHSFAMIPLADAQQYLDMGSS--VSGI 224 ++ N +P + P+ R V D ++ + ++ L + + G+ Sbjct: 116 LIFSNLSPSGFSLVPQAKRFDVKARFTSGLIFYDKAYMYTDVNALRKVLGISNQQSYDGV 175 Query: 225 ALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVAC 284 + + F K V S + W + +++ + +++ ++L+I VA Sbjct: 176 HVYSENAF---KDVEKLKSYLKSDYAVVGWWEQNQNFFSALKLEKRALFIVLMLIILVAS 232 Query: 285 FNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQ 344 NIVS+L+M V ++ +IA+L LGA ++ F G+L G G + G+I+ V Sbjct: 233 LNIVSSLLMIVMNRRTEIALLLALGASKLEVKKSFFALGMLIGGGGMIIGIILAFFVLWL 292 Query: 345 LTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASN 404 L L +D+Y LP +L +D LV AL++ L+S+YPA++A+ Sbjct: 293 LGN--------FDIVTLPADVYGTSKLPLDLSVMDFSLTLVGALIIIALSSYYPAKKATQ 344 Query: 405 IDPARVLSGQ 414 I+ L + Sbjct: 345 INVLDTLRNE 354
>gi|57242014|ref|ZP_00369954.1| ABC transporter, ATP-binding protein [Campylobacter upsaliensis RM3195] gi|57017206|gb|EAL53987.1| ABC transporter, ATP-binding protein [Campylobacter upsaliensis RM3195] Length = 641 Score = 182 bits (462), Expect = 2e-44 Identities = 46/425 (10%), Positives = 138/425 (32%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 I + L S ++ +GI +G+A ++ ++ G + ++ ++ + Sbjct: 250 FKIAYSSIIAHK------LRSFLTMLGIIIGIASVVCVVALGLGSQVKVLQTTSSLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A +G++ + +GV Sbjct: 304 IEIRPGRGFGDLRSGKTRLNFSDLETLRSLEYLEAVEASERTSGVLTYTNKSLNARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + ++ ++ + + K Sbjct: 364 GVNSFNMDGLKLEVGRILDEKDLSVSANVAVLDFNAKKNIFPNV--------KSEELLGK 415 Query: 179 LMQPKRVRLHVAGILQ--LSGQLDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + GILQ + + IP L + I +K+ D ++ Sbjct: 416 IVIFNSTPFKIIGILQKDTRRPISDNIVRLYIPYTTLMNKLTGDRKLREIIVKVKDNVSS 475 Query: 235 NKLVRDA-----GEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + + ++ + V +++ Sbjct: 476 SLAENAIIRVLELKREQRDFFTFNIDSFKEAITANKRTTTILTICVALIALVVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ + G+ GV + V Sbjct: 536 IMLVSVSERTREIGIRMAVGARREDILMQFLIEAVMICVIGAFMGVALSFGVIFVFNLFA 595 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 + V L++++L+ L+ ++PA+ A+N++P Sbjct: 596 SDFLMIF-------------------SGSAVLTGLLSSVLIGLIFGFFPAKNAANLNPIN 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641
>gi|32263408|gb|AAP78453.1| ABC transporter [Helicobacter hepaticus ATCC 51449] gi|32267355|ref|NP_861387.1| ABC transporter [Helicobacter hepaticus ATCC 51449] Length = 405 Score = 179 bits (454), Expect = 2e-43 Identities = 68/443 (15%), Positives = 155/443 (34%), Gaps = 67/443 (15%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M + + ++ LR L + ++ +G+ +GV ++V +S NG + +++RI Sbjct: 1 MILN-AFILALRQI------KRNFLRAFLTMLGVIIGVGAVVVMISLGNGTTKMISDRIS 53 Query: 61 AVVPHGEIEAVDQPWTNWQEALDH-----------VQKVPGIAAAAPYINFTGLVESGAN 109 ++ + + + L + I A AP + ++ A Sbjct: 54 SLGSNLLLVFPARVMNPSGANLRRNFSLQEAQNLTMLTHEYIQALAPISQGSVTLQYQAQ 113 Query: 110 LRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIM 169 A Q +GVN + S + ++ G +IG+ V L Sbjct: 114 NTATQAQGVNAAFFEVTQWDTSEGRSFEENEYRVGSNVCMIGQSVRKNL----------- 162 Query: 170 IPNSNPEHKLMQPKRVRLHVAGILQLSGQ-----LDHSFAMIPLADAQQYLDMGSS---V 221 NP + ++ + G+L+ GQ ++PL + + ++ V Sbjct: 163 FNEGNPLGQRIRLNTIVCECIGVLESKGQGGMGNDQDDVILLPLKTFLRSVSGSNTLFFV 222 Query: 222 SGIALKMTDVFNANKLVRDAGEVTN----------SYVYIKSWIGTYGYMYRDIQMIRAI 271 + + L+ D ++ +++ + I + + + A Sbjct: 223 NRLMLRAKDGVDSEQMLPALTQALRQVRNVRAGDRDSFEIMDTKQIAETLTSATKRLTAF 282 Query: 272 MYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGS 331 + L + + V I++ ++++V +++ +I +GA + F+ + G Sbjct: 283 LGLIAGVSLVVGGIGIMNIMLVSVTERTKEIGTRMAIGALQSEVLMQFLIESITLSSLGG 342 Query: 332 LCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLS 391 + G+I SL L+ +E +P + + + Sbjct: 343 IIGIIWAFFASLSLSYYME--------------------IPFIFDIPTAIIAFLFSAFIG 382 Query: 392 LLASWYPARRASNIDPARVLSGQ 414 +L + PARRAS ++P L + Sbjct: 383 VLFGYLPARRASKLNPIDALRHE 405
>gi|57167636|ref|ZP_00366776.1| ABC transporter, ATP-binding protein [Campylobacter coli RM2228] gi|57020758|gb|EAL57422.1| ABC transporter, ATP-binding protein [Campylobacter coli RM2228] Length = 641 Score = 174 bits (441), Expect = 5e-42 Identities = 52/425 (12%), Positives = 152/425 (35%), Gaps = 50/425 (11%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 L I + L S+++ +GI +G+A ++ ++ G + ++ I + + Sbjct: 250 LKIAYSSILAHK------LRSILTMLGIIIGIASVVCVVALGLGSQAKVLESIARLGTNT 303 Query: 67 EIEAVDQPWTNWQE--------ALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGV 118 + + + + L+ ++ + + A + N +G+ + + +GV Sbjct: 304 IEIRPGKGFGDLRSGKTRLNFSDLETLRSLDYLEAVDAHSNTSGVATYTNISLSARAEGV 363 Query: 119 NPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHK 178 + + + ++ L +Q + + + Sbjct: 364 GVNNFAIEGLKLQVGRILNNEDIETNANVAVLDFNAKKNLFPRQ--------KSEDVLGR 415 Query: 179 LMQPKRVRLHVAGILQLSGQ--LDHSFA--MIPLADAQQYLDMGSSVSGIALKMTDVFNA 234 ++ + G+LQ + ++ + +P L ++ I +K+ D ++ Sbjct: 416 VVIFNSQPFKIIGVLQKDTEKPIEDNVVRLYMPYTTLMNKLTGDRNLREIIVKVKDDVSS 475 Query: 235 NKLVRDAGEVT-----NSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVS 289 + + + + + + + V+ + V +++ Sbjct: 476 TLAENAIIRILEIKRGQRDFFTFNSDTFKQAITANKRTTTILTASVAVIALIVGGIGVMN 535 Query: 290 TLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPII 349 ++++V +++ +I + +GA+ I F+ ++ G++ GV++ V V + Sbjct: 536 IMLVSVSERTREIGIRMAIGARREDIMMQFLIEAVMICSMGAILGVLLSVFVIFGFNTL- 594 Query: 350 EWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPAR 409 P L+ V L++++L+ ++ ++PAR A+N++P Sbjct: 595 ------------------STDFPMILNAYSVLLGLLSSVLIGVIFGFFPARNAANLNPIS 636 Query: 410 VLSGQ 414 LS + Sbjct: 637 ALSKE 641
>gi|57238673|ref|YP_179804.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] gi|57167477|gb|AAW36256.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] Length = 372 Score = 132 bits (331), Expect = 3e-29 Identities = 70/398 (17%), Positives = 151/398 (37%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + I Sbjct: 12 KSISFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDTKLSKELKAYGANVMISPKRDENFI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + +++ A P++ + + V G + + + V+ + Sbjct: 72 SNAEYEKIKENLKARALTPFLYDFLNL----GSTSGVVLGTDFRALKITKPFLE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L +K G+ + I PN K ++L + GIL + Sbjct: 127 FSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNPN--------NGKSIKLTIKGILSSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 + D S + PL+ Q D + + + N +++ + N ++ K Sbjct: 179 EFD-SIVLAPLSVVQNLSDRAGINYANAVVY----GNFDEVKAKTQAINNEFIDAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + F SL G G+ ++ + G+ +S I F Sbjct: 294 KLFASECFIVSFFASLIGAFCGIFLA-----------NVFGYLIFNSSIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 ++ VF L+ +L+ + LA+++P +RA I+ L G+ Sbjct: 335 FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE 372
>gi|6969078|emb|CAB73649.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11346957|pir||C81263 probable integral membrane protein Cj1662 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792966|ref|NP_282789.1| putative integral membrane protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 372 Score = 129 bits (325), Expect = 1e-28 Identities = 70/398 (17%), Positives = 152/398 (38%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + I Sbjct: 12 KSISFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDIKLSKELKAYGANVMISPKQDENFI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + +++ A P++ + + V G + + + V+ + Sbjct: 72 SNTEYEKIKENLKARALTPFLYDFLNL----GSTSGVVLGTDFRALKITKPFLE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L +K G+ + I PN K ++L + GIL + Sbjct: 127 FSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNPN--------NGKSIKLTIKGILSSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 + D S + PL+ Q D + + + N +++ ++N ++ K Sbjct: 179 EFD-SIVLAPLSVVQNLSDRAGINYANAVVY----GNFDEVKAKTQAISNEFIDAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + F SL G G+ ++ + G+ +S I F Sbjct: 294 KLFASECFIVSFFASLIGAFCGIFLA-----------NVFGYLIFNSSIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 ++ VF L+ +L+ + LA+++P +RA I+ L G+ Sbjct: 335 FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE 372
>gi|57168779|ref|ZP_00367910.1| ABC transporter, ATP-binding protein, putative [Campylobacter coli RM2228] gi|57019826|gb|EAL56509.1| ABC transporter, ATP-binding protein, putative [Campylobacter coli RM2228] Length = 431 Score = 126 bits (316), Expect = 1e-27 Identities = 69/451 (15%), Positives = 151/451 (33%), Gaps = 86/451 (19%) Query: 19 RGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN- 77 R + ++ ++ L +L L+ E+ ++ + + + + Sbjct: 12 RNKIQKFLAFLTCF---LATLLLCTMLNITLSIGDEVTKQLKSYGSNILVLPKGSSLSIE 68 Query: 78 ------------------WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVN 119 L + I A AP++ ++S + + I + G Sbjct: 69 IGNELYEPLKNKNYLEEKNLYMLKDIYWRNNITAFAPFLEGKIEIKSNNSSKKILLYGTY 128 Query: 120 PQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMI 170 Q+ + F+ G + K +I++G+ A +K + ++ Sbjct: 129 FQKAIEIKDDDDFITGIKSLYPYLKVQGKWAKDDSNEIMLGEDFAKNNDLKINGTIQLI- 187 Query: 171 PNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMT- 229 + + GIL + + + PL AQ+ L+ + ++ Sbjct: 188 --------GENKISKEVKIVGILLHANPKMSNKIITPLNLAQELLEKKGLYASAEVRAFT 239 Query: 230 -DVFNANKLVRDAGEVTNSYVYIKSWI-------------------------GTYGYMYR 263 ++ VR GE + W Sbjct: 240 IPESALSEKVRRMGEEKLDQIEYDKWYCSAYVGSIASQISDGLPGADAKALNAISDAQSL 299 Query: 264 DIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYG 323 ++ I+++M + ++ + VA I S + + + +I +L+ LGA I +F Sbjct: 300 VVKKIQSLMAITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGANTFQIYLLFAGEN 359 Query: 324 LLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYV 383 L+ L ++ G I G+ +S ++ I YFI+ + ++ + Sbjct: 360 LIIALVSAVFGFIFGIGLSELISLGIFG--------------YFIN-----IAFIALPLS 400 Query: 384 LVTALLLSLLASWYPARRASNIDPARVLSGQ 414 LV A L+++L P + +N+ PA VL G+ Sbjct: 401 LVFAGLIAILGCLLPIKNIANLSPAGVLYGR 431
>gi|57240580|ref|ZP_00368529.1| probable integral membrane protein Cj1662 [Campylobacter lari RM2100] gi|57018921|gb|EAL55694.1| probable integral membrane protein Cj1662 [Campylobacter lari RM2100] Length = 371 Score = 126 bits (316), Expect = 2e-27 Identities = 66/397 (16%), Positives = 144/397 (36%), Gaps = 37/397 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I I + +G V + + +L+ + A + I D + Sbjct: 12 KSLIFSYKRVCIIFIAVFIGAMVSASFFNIYFDIDTKLSKELKAYGANFIITPKDGEFLG 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 E + ++ A P++ + V GV+ + ++ + Sbjct: 72 MDE-FNQAKENLKAKALTPFLYGF----YNLESSSAVVVGVDFANLKLTKPFIEVLK-GS 125 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G +A L++K G + I P+ + K V++ + IL+ + Sbjct: 126 FSLSDFSEDSAFVGADLAKQLELKIGQELQIYNPSIS--------KIVKVKIKAILRSND 177 Query: 198 QLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGT 257 + D + L AQ+ A+ + D + ++ + + I S + Sbjct: 178 EQDGVLII-SLKKAQELAAKEVINYAQAILLGDYESLDQKAKGLSKANIEAKVIASVSIS 236 Query: 258 YGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRA 317 G + ++ I+A+M L + ++ ++ ++ +TL + + +IA+ LGAK + Sbjct: 237 EGVV---LEKIKALMALISLTILLISSLSVNTTLSAVIFSRKKEIALHLALGAKHREVIK 293 Query: 318 IFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHW 377 +F + L SL G G ++ Y I + Sbjct: 294 LFGAEVFILSLSASLLGAFCGYFLANIFG-------------------YLIFNASIDFRL 334 Query: 378 LDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 L VF+ ++ +L+ + AS P ++A I+ L G+ Sbjct: 335 LSVFFAVLISLVFAFFASILPLKKALKINVCENLKGE 371
>gi|34557889|ref|NP_907704.1| ABC TRANSPORT PERMEASE PROTEIN-Involved in lipoprotein release [Wolinella succinogenes DSM 1740] gi|34483607|emb|CAE10604.1| ABC TRANSPORT PERMEASE PROTEIN-Involved in lipoprotein release [Wolinella succinogenes] Length = 424 Score = 124 bits (311), Expect = 6e-27 Identities = 80/457 (17%), Positives = 155/457 (33%), Gaps = 84/457 (18%) Query: 6 SLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNN--RILAVV 63 I G + ++ +++ + +L A+L + L + +EL + + V+ Sbjct: 3 EFRIIKGAIWGNKTQKGLAFLTIF--LASSLIAAMLNLTLGVGDKIAKELRSYGSNIVVL 60 Query: 64 PHG----------EIEAVDQPWTNWQEALDHVQKVP---GIAAAAPYINFTGLVESGANL 110 PHG E + + + L ++++ I AP++ + G Sbjct: 61 PHGGSLSLEIEGQEFQPLQGETYLEESRLKSIKEIFWRNNIVGFAPFLEGRIKDKEGEVW 120 Query: 111 R-------AIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQG 163 I P + L F + +I++G+ +A +K G Sbjct: 121 TLAGTYFDKIVPIADEPSYQTGAKILYPFWSVEGEWIEDDSMTEILLGEELAKNRGLKIG 180 Query: 164 DWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSVSG 223 D + + L V GIL + + + L+ Q+ LD VS Sbjct: 181 DTIWLGALE--------------LKVKGILH-GFEEGNYKIIASLSLVQKLLDAQGKVSR 225 Query: 224 IALKM-------------TDVFNANKLVRDAG-------------EVTNSYVYIKSWIGT 257 + + D + L D E K+ + Sbjct: 226 VEVSALTVPENDLSIKARRDPEALDALEYDTWYCTAYVSSIAYQIEEEYKGASAKALMKV 285 Query: 258 YGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRA 317 + ++ I+++M + +L + A I S + + + +I +L+ LGA I A Sbjct: 286 SDGESKVVKKIQSLMGVVTLLALLSASIGIASLMASEIHRRKKEIGLLKALGASSLSIYA 345 Query: 318 IFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHW 377 +FV LL L G + G +S+ + + GH + W Sbjct: 346 LFVSESLLVALLSGTLGGLAGYGISMLMA------LGIFGHTL-------------GVSW 386 Query: 378 LDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + + + ALL++L S P R ++ PA VL G+ Sbjct: 387 IILPLTVSFALLVALFGSLLPMRGVVDLLPAEVLYGR 423
>gi|6969077|emb|CAB73648.1| possible ABC transport system permease protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|11346807|pir||B81263 probable ABC transport system permease protein Cj1661 [imported] - Campylobacter jejuni (strain NCTC 11168) gi|15792965|ref|NP_282788.1| possible ABC transport system permease protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Length = 430 Score = 121 bits (303), Expect = 5e-26 Identities = 72/463 (15%), Positives = 151/463 (32%), Gaps = 88/463 (19%) Query: 7 LLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHG 66 +++ + + ++ ++ L +L L+ E+ ++ + + Sbjct: 1 MMLAKMIFNSIFKNKIQKFLAFLTCF---LATLLLSTMLNITLSIGDEVTKQLKSYGSNI 57 Query: 67 EIEAVDQPWTN-------------------WQEALDHVQKVPGIAAAAPYINFTGLVESG 107 + + + + I A AP++ +E Sbjct: 58 LVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNITALAPFLEGKITIE-- 115 Query: 108 ANLRAIQVKGVNPQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADAL 158 + + + G Q+ ++ F+ G K +I++G+ A Sbjct: 116 NSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKDDSNEIMLGEDFAKNN 175 Query: 159 KVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG 218 K+K GD + + + + GIL + + + PL AQ L+ Sbjct: 176 KLKLGDTIKFI---------GENNQSKEAKIVGILLHANPKMSNKIIAPLNLAQDLLNKQ 226 Query: 219 SSVSGIALKMT--DVFNANKLVRDAGEVTNSYVYIKSWI--------------------- 255 S ++ ++ VR GE + W Sbjct: 227 GLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQISDGLPGADA 286 Query: 256 ----GTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAK 311 ++ I+++M + ++ + VA I S + + + +I +L+ LGA Sbjct: 287 KALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGAN 346 Query: 312 DGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFL 371 I IF L+ LF +L G I G +S ++ LS YFID Sbjct: 347 TFQIYLIFASENLIVALFAALLGFIFGTALSQIIS--------------LSIFGYFID-- 390 Query: 372 PSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + ++ + + A L++LL P + + + A VL G+ Sbjct: 391 ---IAFVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR 430
>gi|57238672|ref|YP_179803.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] gi|57167476|gb|AAW36255.1| ABC transporter, permease protein [Campylobacter jejuni RM1221] Length = 429 Score = 120 bits (300), Expect = 1e-25 Identities = 69/456 (15%), Positives = 147/456 (32%), Gaps = 88/456 (19%) Query: 8 LIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGE 67 ++ + + ++ ++ L +L L+ E+ ++ + + Sbjct: 1 MLAKMIFNSIFKNKIQKFLAFLTCF---LATLLLSTMLNITLSIGDEVTKQLKSYGSNIL 57 Query: 68 IEAVDQPWTN-------------------WQEALDHVQKVPGIAAAAPYINFTGLVESGA 108 + + + + I A AP++ +E Sbjct: 58 VLPKGSSLSIEIGNELYKPLKNKNYLEEKNLYMIKDIYWRNNITALAPFLEGKITIE--N 115 Query: 109 NLRAIQVKGVNPQQEQRLSALPSFVQGD---------AWRNFKAGEQQIIIGKGVADALK 159 + + + G Q+ ++ F+ G K +I++G+ A K Sbjct: 116 SQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQREWAKDDSNEIMLGEDFAKNNK 175 Query: 160 VKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGS 219 +K GD + ++ + + GIL + + + PL AQ L+ Sbjct: 176 LKLGDTIKLI---------GENNQSKEAKIVGILLHANPKMSNKIIAPLNLAQDLLNKQG 226 Query: 220 SVSGIALKMT--DVFNANKLVRDAGEVTNSYVYIKSWI---------------------- 255 S ++ ++ VR GE + W Sbjct: 227 FYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQISDGLPGADAK 286 Query: 256 ---GTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKD 312 ++ I+++M + ++ + VA I S + + + +I +L+ LGA Sbjct: 287 ALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRKKEIGLLKVLGANT 346 Query: 313 GLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLP 372 I IF L+ LF +L G I G +S ++ LS YFID Sbjct: 347 FQIYLIFAGENLIVALFAALFGFIFGTALSQIIS--------------LSIFGYFID--- 389 Query: 373 SELHWLDVFYVLVTALLLSLLASWYPARRASNIDPA 408 + ++ + + A L++LL P + + + A Sbjct: 390 --IAFIALPLSFIFAGLIALLGCLLPIKNITQLSAA 423
>gi|57168778|ref|ZP_00367909.1| permease protein, putative [Campylobacter coli RM2228] gi|57019825|gb|EAL56508.1| permease protein, putative [Campylobacter coli RM2228] Length = 372 Score = 116 bits (291), Expect = 1e-24 Identities = 68/398 (17%), Positives = 150/398 (37%), Gaps = 38/398 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVDQPWTN 77 + I + + +G L+ + +L+ + A + IE + Sbjct: 12 KSIAFSYQRLFIIVLSVFIGALTCSAFLNIYFDIDTKLSKELKAYGANVIIEPKNDKELI 71 Query: 78 WQEALDHVQKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDA 137 + + +K A P++ + + V G + + + V+ + Sbjct: 72 LNQDYEEGKKNLKARALTPFLYTFLNL----GSTSGVVLGTDFRALKITKPFIE-VKEGS 126 Query: 138 WRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSG 197 + E +G ++ L +K G+ + I P + K L + GIL + Sbjct: 127 FSLSDFDENSAFLGINLSKQLGLKVGNELQIYNPENGKTTK--------LTIKGILLSND 178 Query: 198 QLDHSFAMIPLADAQQYLDMGS-SVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIG 256 +LD S + PL+ Q D + + N +++ ++N + K Sbjct: 179 ELD-SIVLAPLSVVQNLSDTFGIQYANAVVY----GNFDEINTKTKNISNESINAKPISS 233 Query: 257 TYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIR 316 + I+A+M+L +++V+ + ++ +TL + + +IA+ LGAK I Sbjct: 234 VSLSEGLVLDKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRKKEIALRLALGAKKSEIF 293 Query: 317 AIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELH 376 +F + LF S+ G G+ ++ + G+ ++ I F Sbjct: 294 KLFACEYFIISLFASIIGAFCGIFLA-----------NIFGYLIFNASIDF--------R 334 Query: 377 WLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + +F L+ +L + LA+++P ++A I+ L G+ Sbjct: 335 FKAIFMALIVSLFFAFLAAFFPIKKALKINVCENLKGE 372
>gi|34557888|ref|NP_907703.1| INTEGRAL MEMBRANE PROTEIN-Permease Component, involved in lipoprotein release [Wolinella succinogenes DSM 1740] gi|34483606|emb|CAE10603.1| INTEGRAL MEMBRANE PROTEIN-Permease Component, involved in lipoprotein release [Wolinella succinogenes] Length = 381 Score = 111 bits (277), Expect = 4e-23 Identities = 65/402 (16%), Positives = 144/402 (35%), Gaps = 40/402 (9%) Query: 18 RRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEA--VDQPW 75 + S + + +ALG V ++ + ++ + A + + Sbjct: 15 KSLRFSFTQSAVIFVAVALGACVSGAFINVYLDIDSKMRKELKAYGANFIFAPLVQKEEL 74 Query: 76 TNWQEALDHVQKV---PGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSF 132 + +E ++ + A PY+ + G + GV+ + Sbjct: 75 SFSEELYHKLKAQIEPAKLMGATPYLYGLVRLSLGE----ALIAGVDFAGMKETKPFLE- 129 Query: 133 VQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGI 192 V ++ N E+ + G +A +++K G V ++ S + + GI Sbjct: 130 VVHGSYINVDFDERNALAGIDLAKKMELKVGSVVDLVNEKSGFAT--------SVRIKGI 181 Query: 193 LQLSGQLDHSFAMIPLADAQQYLDMGSSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIK 252 + + D + L AQ+ L V + + + +L + V K Sbjct: 182 VSSGDKEDG-LLFVSLPLAQKALGREGEVHLAEAVI--LGDFRELGELGERLREEGVLAK 238 Query: 253 SWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKD 312 ++ I+ +M L V+ + + +TL + ++ +IA+LR +GA Sbjct: 239 PLARISLSEGIVLEKIKLLMALVAFTVLLITSMCVNTTLSSIIFARTKEIALLRAMGASR 298 Query: 313 GLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLP 372 + +F L+ L SL G ++G++++ L I Sbjct: 299 AEVVKLFGSETLIMTLSASLAGALLGILLAQWLGLAIFGSG------------------- 339 Query: 373 SELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 + +L + + +LL + LA++YP +R ++ A +L G+ Sbjct: 340 IDFRFLSIPLAIGISLLFAALAAYYPIKRTLHLGVANILRGE 381
>gi|57240581|ref|ZP_00368530.1| probable ABC transport system permease protein Cj1661 [Campylobacter lari RM2100] gi|57018922|gb|EAL55695.1| probable ABC transport system permease protein Cj1661 [Campylobacter lari RM2100] Length = 430 Score = 99.7 bits (247), Expect = 1e-19 Identities = 72/459 (15%), Positives = 154/459 (33%), Gaps = 84/459 (18%) Query: 8 LIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNN---------- 57 I + ++L+++ + L +L + L N +EL + Sbjct: 4 KIVKNSIFQNKIQKSLALLTIF--LATLLMATMLNLTLGIGNEIAKELRSYGSNILVLPK 61 Query: 58 --RILAVVPHGEIEAVDQPWTNWQEALDHVQKVP---GIAAAAPYINFTGLVESGA-NLR 111 + V E + + L ++++ I A AP+++ +++ N Sbjct: 62 GASLSVEVGSKIYEPLKNQNFLEENKLHTIKEIFWRNNINAFAPFLDIQVKIQTPNANYE 121 Query: 112 AIQVKGVNPQQEQRLSALPSFVQG----------DAWRNFKAGEQQIIIGKGVADALKVK 161 I + G + ++ F G +I++GK +A +K Sbjct: 122 NISLVGTYFDKAIKVQDDDDFYAGIKELYKYSQIKGNYPKDDSLDEIMLGKDLAQKYDLK 181 Query: 162 QGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMGSSV 221 D +S+ + + ++ + GI+ L+ Q + + L AQ+ Sbjct: 182 INDEISLTQND----------QIFKVKIIGIIDLT-QAFSNKIITSLLLAQKLSKKEGLF 230 Query: 222 SGIALKM---TDVFNANKLVRDAGEVTNSYV-------YIKSWIGTYGYMYR-------- 263 + + + A K RD + Y+ S ++ Sbjct: 231 AKAEVSALTIPENDLAQKARRDVDSLDQLEYDQWYCTAYVSSIAYQIAEDFKGASTKVVS 290 Query: 264 --------DIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLI 315 + I+++M + ++ + VA I S + + + +I +L+ LGA I Sbjct: 291 AISDAESLIVSKIQSLMAVVSIICLIVASIAISSLMSADIFRRKSEIGLLKALGASTLQI 350 Query: 316 RAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSEL 375 IF G++ L G++ G + GV VS + I + Sbjct: 351 YMIFALEGVVVALIGAVFGFVFGVGVSEAIALSIFDHA-------------------IAI 391 Query: 376 HWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLSGQ 414 W+ + L A+L+ L + + S + + VL G+ Sbjct: 392 SWIILPICLFFAVLIVFLGCLFSIKGISKLSTSEVLYGK 430
>gi|34557053|ref|NP_906868.1| hypothetical protein WS0637 [Wolinella succinogenes DSM 1740] gi|34482768|emb|CAE09768.1| hypothetical protein [Wolinella succinogenes] Length = 393 Score = 77.3 bits (189), Expect = 8e-13 Identities = 58/417 (13%), Positives = 125/417 (29%), Gaps = 29/417 (6%) Query: 1 MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRIL 60 M+ SL I L R + +S++ + I + A I+ + + +R +I Sbjct: 1 MSFNPSL-IALSI--ASLRRRALKNLSLLIALVIVIFTASSILFTA--DSIQRVNKEQIG 55 Query: 61 AVVPHGEIEAVDQPWTNWQE-ALDHVQKVPGIAAAAPYINFTGLVESG---ANLRAIQVK 116 + V +E +D + ++ G+ A I + Sbjct: 56 RLPDITMQRMVGGRLETIEEGRVDELLEIEGVEWAIGRIWGYYFFPHAGLQNGGANFTLL 115 Query: 117 GVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKVKQGDWVSIMIPNSNPE 176 G++P + + + E ++ + + + S+ Sbjct: 116 GIDPYYGSE----ENHRLPEEFLEILPQESGVM-------HVGLGVKRAMEKSFSPSSLA 164 Query: 177 HKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNAN 235 + RL + +L+ G D F ++P +A+ L M V+ I LK+++ Sbjct: 165 FVSPGGELWRLKLGLVLEEVGLYD--FILLPKEEARAILGMEEGRVTDIVLKVSNPKEVA 222 Query: 236 KLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAV 295 + E I + I + + V I Sbjct: 223 TIASKLIERYPDS-KILTKEQITLAYESLIGYKSGLFLALFITVFLAIGIVIYEKASGIS 281 Query: 296 KDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKL 355 +++ +I++ + +G G + + L G++ L L Sbjct: 282 EEERREISLQKAIGWSVGEVMTLKFLEHGWLILLALFLGLLGAYFFVYGLGS-----PYL 336 Query: 356 IGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSLLASWYPARRASNIDPARVLS 412 SSD+ + ++ + L L A P R++ D V+ Sbjct: 337 SQIFISSSDLALPFSPRLGAGFFEILTYGLFGAFLYLSAVMIPVWRSAMSDAGEVIR 393
>gi|34556820|ref|NP_906635.1| hypothetical protein WS0389 [Wolinella succinogenes DSM 1740] gi|34482535|emb|CAE09535.1| hypothetical protein [Wolinella succinogenes] Length = 369 Score = 68.9 bits (167), Expect = 2e-10 Identities = 53/393 (13%), Positives = 123/393 (31%), Gaps = 53/393 (13%) Query: 28 VISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAV--DQPWTNWQEALDHV 85 + S + V +L L + + +L + P +E + + +E L+ V Sbjct: 22 LFSFLIFTFIVTLLSAVLFISDSLQSDLVESV-KFQPDIVVENTLAGRAFKLSEEDLEGV 80 Query: 86 QKVPGIAAAAPYINFTGLVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGE 145 ++ G++A + F Q W K+ Sbjct: 81 AELAGVSAVEGVVEGR----------------------------YYFAQQRIWFEIKSDP 112 Query: 146 ----QQIIIGKGVADALKV-KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLD 200 Q+ +G GV +A++ D + P K++ + L Sbjct: 113 SLSINQMSVGAGVREAMRAQHYEDEFNFFTPKGKFTLKIINTHSP---------SAHLLS 163 Query: 201 HSFAMIPLADAQQYLDMG-SSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYG 259 +S + +A+ L G S + + + + + ++ Sbjct: 164 NSAIYVHPINARAILGFGLEEYSKLYVTVPNPNEVGDIALKIDQLLP-TAKATPKEDVMA 222 Query: 260 YMYRDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIF 319 I + ++ + + + + + +K +IA+LR++G I A+ Sbjct: 223 GYQHLFYYKGGIFMILYLVCMVSFLILLKNQIGLVYGEKKREIAILRSIGYGIREIIAMK 282 Query: 320 VWYGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLD 379 + L GV+I V + L+ FL S++ L + Sbjct: 283 FIQNGVVALSAFGMGVLIAYV------YVFVAQAPLLRLIFLGSELSHRVELTPIVDLNL 336 Query: 380 VFYVLVTALLLSLLASWYPARRASNIDPARVLS 412 +F + V +++ + P+ + + D + + Sbjct: 337 LFLLFVFSVIPFMAFVILPSWKVAIADMSEAVR 369
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples Posted date: Apr 3, 2005 3:19 AM Number of letters in database: 819,463,594 Number of sequences in database: 2,419,489 Lambda K H 0.324 0.139 0.415 Gapped Lambda K H 0.267 0.0421 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 388,361,005 Number of Sequences: 2419489 Number of extensions: 12728102 Number of successful extensions: 206548 Number of sequences better than 10.0: 5624 Number of HSP's better than 10.0 without gapping: 1853 Number of HSP's successfully gapped in prelim test: 3771 Number of HSP's that attempted gapping in prelim test: 194398 Number of HSP's gapped (non-prelim): 10778 length of query: 414 length of database: 819,463,594 effective HSP length: 130 effective length of query: 284 effective length of database: 504,930,024 effective search space: 143400126816 effective search space used: 143400126816 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 76 (33.8 bits)
