README for MUSCLE download -------------------------- The archive includes these files: README.txt LICENSE.txt muscle (Linux) or muscle.exe (Windows) seqs.fa The documentation is available as a separate download or can be browsed on the web at the MUSCLE site: http://www.drive5.com/muscle There are no configuration files, environment variables or other setup issues -- to install, just copy the executable to a directory that is accessible from your computer. On Linux, the executable is named muscle, on Windows it is named muscle.exe.